miRNA display CGI


Results 41 - 60 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 3' -56.1 NC_005261.1 + 128839 0.73 0.529212
Target:  5'- cGCGCGGCUGGCcGCCacGGUGCccCGCc -3'
miRNA:   3'- cCGUGCUGAUCGaCGG--CCAUGucGCG- -5'
23738 3' -56.1 NC_005261.1 + 135746 0.73 0.529212
Target:  5'- uGGCGCGcCUcAGCcGCgCGGUGCgcuccGGCGCa -3'
miRNA:   3'- -CCGUGCuGA-UCGaCG-GCCAUG-----UCGCG- -5'
23738 3' -56.1 NC_005261.1 + 81680 0.73 0.529212
Target:  5'- gGGCACGACUGccGCccGuCCGGgccCGGCGCc -3'
miRNA:   3'- -CCGUGCUGAU--CGa-C-GGCCau-GUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 51700 0.73 0.539148
Target:  5'- cGCACGACUacuuccaccAGCUGCgGGggguCGuGCGCa -3'
miRNA:   3'- cCGUGCUGA---------UCGACGgCCau--GU-CGCG- -5'
23738 3' -56.1 NC_005261.1 + 83295 0.73 0.539148
Target:  5'- aGGCACGGCUGcgcggggucguGCaGCuCGG-GCGGCGCc -3'
miRNA:   3'- -CCGUGCUGAU-----------CGaCG-GCCaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 37184 0.73 0.539148
Target:  5'- gGGCGCuGCUGGCggcGCUGcugGCGGCGCu -3'
miRNA:   3'- -CCGUGcUGAUCGa--CGGCca-UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 29870 0.73 0.529212
Target:  5'- cGGCGcCGGCgccGCUGCCGc--CAGCGCc -3'
miRNA:   3'- -CCGU-GCUGau-CGACGGCcauGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 97682 0.73 0.529212
Target:  5'- gGGcUugGGCggGGCUGCCGGgGCGGUGg -3'
miRNA:   3'- -CC-GugCUGa-UCGACGGCCaUGUCGCg -5'
23738 3' -56.1 NC_005261.1 + 118237 0.73 0.525256
Target:  5'- cGGcCGCGGCcuacgccgucugcGGCgUGCCGGUGCAcuGCGCg -3'
miRNA:   3'- -CC-GUGCUGa------------UCG-ACGGCCAUGU--CGCG- -5'
23738 3' -56.1 NC_005261.1 + 89947 0.73 0.490199
Target:  5'- uGGCGCGGCUG---GCCGGgaucACAGUGCc -3'
miRNA:   3'- -CCGUGCUGAUcgaCGGCCa---UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 64881 0.73 0.499833
Target:  5'- aGCgGCGGCgggAGC-GCCGGguccaGCAGCGCg -3'
miRNA:   3'- cCG-UGCUGa--UCGaCGGCCa----UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 95604 0.73 0.499833
Target:  5'- cGCAcCGGCcGGCUGCUGG-ACcGCGCg -3'
miRNA:   3'- cCGU-GCUGaUCGACGGCCaUGuCGCG- -5'
23738 3' -56.1 NC_005261.1 + 97733 0.73 0.499833
Target:  5'- gGGCuaACGGCUGGCagggGCgGGgcgggcucgGCGGCGCg -3'
miRNA:   3'- -CCG--UGCUGAUCGa---CGgCCa--------UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 31472 0.73 0.499833
Target:  5'- cGGCcUGAgUGGCcGCCGGUgcGCGGCGg -3'
miRNA:   3'- -CCGuGCUgAUCGaCGGCCA--UGUCGCg -5'
23738 3' -56.1 NC_005261.1 + 152 0.73 0.509549
Target:  5'- uGGCAgGGCUGGCggaguugGCgGGgcUGGCGCc -3'
miRNA:   3'- -CCGUgCUGAUCGa------CGgCCauGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 13133 0.73 0.509549
Target:  5'- gGGCGCGugUGGU---CGGUgACGGCGCg -3'
miRNA:   3'- -CCGUGCugAUCGacgGCCA-UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 137835 0.73 0.509549
Target:  5'- uGGCAgGGCUGGCggaguugGCgGGgcUGGCGCc -3'
miRNA:   3'- -CCGUgCUGAUCGa------CGgCCauGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 69297 0.73 0.519344
Target:  5'- cGGCGCGG--GGC-GCCGGUgGCGGCGg -3'
miRNA:   3'- -CCGUGCUgaUCGaCGGCCA-UGUCGCg -5'
23738 3' -56.1 NC_005261.1 + 3854 0.72 0.549147
Target:  5'- cGGCGcCGGCgccGCgcgGCCGGcgagcACGGCGCg -3'
miRNA:   3'- -CCGU-GCUGau-CGa--CGGCCa----UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 44021 0.72 0.549147
Target:  5'- cGGCGCGGCgGGCgGCCGccgcGCGGCGg -3'
miRNA:   3'- -CCGUGCUGaUCGaCGGCca--UGUCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.