miRNA display CGI


Results 61 - 80 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 3' -56.1 NC_005261.1 + 108198 0.72 0.58965
Target:  5'- gGGCGCGAg-AGCUgcGCCaGcACGGCGCg -3'
miRNA:   3'- -CCGUGCUgaUCGA--CGGcCaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 14343 0.72 0.598847
Target:  5'- cGGCagcagcaGCGGCagcAGCcgcgGCCGGgGCGGCGCg -3'
miRNA:   3'- -CCG-------UGCUGa--UCGa---CGGCCaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 86212 0.72 0.59987
Target:  5'- cGGCGCGcCgaaccggGGCaGCCGGUgccgcagccgauGCAGCGUc -3'
miRNA:   3'- -CCGUGCuGa------UCGaCGGCCA------------UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 60053 0.72 0.603966
Target:  5'- cGGCgGCGGCgaagAGCggcgGCCGGUccgcgggcugcguggGCAGCaGCa -3'
miRNA:   3'- -CCG-UGCUGa---UCGa---CGGCCA---------------UGUCG-CG- -5'
23738 3' -56.1 NC_005261.1 + 104712 0.72 0.579461
Target:  5'- cGGCugGACggccgagGGCgcgucgUGCCGcGUGCGcGCGCc -3'
miRNA:   3'- -CCGugCUGa------UCG------ACGGC-CAUGU-CGCG- -5'
23738 3' -56.1 NC_005261.1 + 28245 0.72 0.56931
Target:  5'- cGCGCGAUagcgggGGCUGCuCGGgGgGGCGCu -3'
miRNA:   3'- cCGUGCUGa-----UCGACG-GCCaUgUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 79823 0.72 0.56931
Target:  5'- cGCGCGGCggcgcGGCgGCCaGcGCAGCGCu -3'
miRNA:   3'- cCGUGCUGa----UCGaCGGcCaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 101444 0.72 0.548144
Target:  5'- cGGCGCGguccagcGCUGGCcccagcgccGCCGGcgGCGGCGUg -3'
miRNA:   3'- -CCGUGC-------UGAUCGa--------CGGCCa-UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 3854 0.72 0.549147
Target:  5'- cGGCGcCGGCgccGCgcgGCCGGcgagcACGGCGCg -3'
miRNA:   3'- -CCGU-GCUGau-CGa--CGGCCa----UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 44021 0.72 0.549147
Target:  5'- cGGCGCGGCgGGCgGCCGccgcGCGGCGg -3'
miRNA:   3'- -CCGUGCUGaUCGaCGGCca--UGUCGCg -5'
23738 3' -56.1 NC_005261.1 + 52943 0.72 0.549147
Target:  5'- uGGCGCcagucaaacucgGAgcAGCgccgcGCCGGUGCGGCGCc -3'
miRNA:   3'- -CCGUG------------CUgaUCGa----CGGCCAUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 67097 0.72 0.549147
Target:  5'- uGGCGCGACgcGgUGCgGGcgGCGcGCGCa -3'
miRNA:   3'- -CCGUGCUGauCgACGgCCa-UGU-CGCG- -5'
23738 3' -56.1 NC_005261.1 + 133310 0.72 0.56324
Target:  5'- aGG-ACGACUGGCugcucgcgcagcuccUGCCGGcACGcGCGCg -3'
miRNA:   3'- -CCgUGCUGAUCG---------------ACGGCCaUGU-CGCG- -5'
23738 3' -56.1 NC_005261.1 + 126702 0.71 0.620376
Target:  5'- cGGUGCGGgaAGCgGCUGGUucGCGuGCGCg -3'
miRNA:   3'- -CCGUGCUgaUCGaCGGCCA--UGU-CGCG- -5'
23738 3' -56.1 NC_005261.1 + 83743 0.71 0.620376
Target:  5'- cGGCgucgaggugGCGGCgcGCcacgGCCGGgucGCAGCGCc -3'
miRNA:   3'- -CCG---------UGCUGauCGa---CGGCCa--UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 1174 0.71 0.619349
Target:  5'- cGGCccgcgccGCGGCcggGGCcgggGCCGGgcGCGGCGCg -3'
miRNA:   3'- -CCG-------UGCUGa--UCGa---CGGCCa-UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 57280 0.71 0.610115
Target:  5'- cGCGCGGC-AGCUGCuCGcGaGCAGcCGCg -3'
miRNA:   3'- cCGUGCUGaUCGACG-GC-CaUGUC-GCG- -5'
23738 3' -56.1 NC_005261.1 + 39893 0.71 0.610115
Target:  5'- cGCGCGGCUGuGCaGCUGGcGC-GCGCg -3'
miRNA:   3'- cCGUGCUGAU-CGaCGGCCaUGuCGCG- -5'
23738 3' -56.1 NC_005261.1 + 111610 0.71 0.610115
Target:  5'- gGGCGCGGCUgGGCUGC-GGcGCcGUGCc -3'
miRNA:   3'- -CCGUGCUGA-UCGACGgCCaUGuCGCG- -5'
23738 3' -56.1 NC_005261.1 + 30125 0.71 0.620376
Target:  5'- uGGCGCGGCccGCgacgCGGUGgAGCGCg -3'
miRNA:   3'- -CCGUGCUGauCGacg-GCCAUgUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.