miRNA display CGI


Results 21 - 40 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 3' -56.1 NC_005261.1 + 118828 0.76 0.366023
Target:  5'- gGGCGCGGCa--CUGCCGcucUGCGGCGCg -3'
miRNA:   3'- -CCGUGCUGaucGACGGCc--AUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 29584 0.76 0.374152
Target:  5'- cGGCGCGuGCagGGCUGCCGGggccACAGCu- -3'
miRNA:   3'- -CCGUGC-UGa-UCGACGGCCa---UGUCGcg -5'
23738 3' -56.1 NC_005261.1 + 64040 0.76 0.374152
Target:  5'- cGGCGCGGCUcuGC-GCCGcGUGguGCGCc -3'
miRNA:   3'- -CCGUGCUGAu-CGaCGGC-CAUguCGCG- -5'
23738 3' -56.1 NC_005261.1 + 87207 0.76 0.382402
Target:  5'- uGGCAUGuAC-AGCUGCacggGGUACAGCGg -3'
miRNA:   3'- -CCGUGC-UGaUCGACGg---CCAUGUCGCg -5'
23738 3' -56.1 NC_005261.1 + 98196 0.75 0.390772
Target:  5'- gGGCGCGGCgggcAGCgggcGCCGccacgGCAGCGCg -3'
miRNA:   3'- -CCGUGCUGa---UCGa---CGGCca---UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 103872 0.75 0.399261
Target:  5'- cGGCGgGGCggcGCcGCCGG-GCGGCGCg -3'
miRNA:   3'- -CCGUgCUGau-CGaCGGCCaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 121816 0.75 0.407867
Target:  5'- uGGCugGGCUcugcgGGCcGCCGcgGCGGCGCa -3'
miRNA:   3'- -CCGugCUGA-----UCGaCGGCcaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 126939 0.75 0.416589
Target:  5'- aGCGCGGCcaggGGC-GCCGGgcgcgggggcgGCAGCGCg -3'
miRNA:   3'- cCGUGCUGa---UCGaCGGCCa----------UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 120002 0.75 0.425423
Target:  5'- gGGCGcCGGCUAcGCgGCCGuGUGCcGCGCc -3'
miRNA:   3'- -CCGU-GCUGAU-CGaCGGC-CAUGuCGCG- -5'
23738 3' -56.1 NC_005261.1 + 90037 0.75 0.434368
Target:  5'- aGCGgGGCUuccuGCUGCCGGacagccaGCGGCGCc -3'
miRNA:   3'- cCGUgCUGAu---CGACGGCCa------UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 30334 0.75 0.434368
Target:  5'- cGGCGCGGCUGGCgGCCGcGcucGCGGCc- -3'
miRNA:   3'- -CCGUGCUGAUCGaCGGC-Ca--UGUCGcg -5'
23738 3' -56.1 NC_005261.1 + 4405 0.75 0.434368
Target:  5'- cGGCgGCGGCgcGCUGCCGGgcCAG-GCc -3'
miRNA:   3'- -CCG-UGCUGauCGACGGCCauGUCgCG- -5'
23738 3' -56.1 NC_005261.1 + 77045 0.74 0.452579
Target:  5'- cGCGCGGCccucGGCgaccgcgccugGCCGGUGCcGCGCg -3'
miRNA:   3'- cCGUGCUGa---UCGa----------CGGCCAUGuCGCG- -5'
23738 3' -56.1 NC_005261.1 + 5514 0.74 0.471199
Target:  5'- cGGCAgCGGCggcgaGGCcGCCGGcuuCGGCGCg -3'
miRNA:   3'- -CCGU-GCUGa----UCGaCGGCCau-GUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 10507 0.74 0.471199
Target:  5'- cGCGCGGCcgccGCUGCgGGccccGCGGCGCg -3'
miRNA:   3'- cCGUGCUGau--CGACGgCCa---UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 66593 0.74 0.480653
Target:  5'- uGCACGuugcGCgcgAGCUGCUGG-AUGGCGCg -3'
miRNA:   3'- cCGUGC----UGa--UCGACGGCCaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 134198 0.74 0.484461
Target:  5'- uGGCGCGGCUcggcgcgcgggucgcGGCgGCCGG--CAGCGUc -3'
miRNA:   3'- -CCGUGCUGA---------------UCGaCGGCCauGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 89947 0.73 0.490199
Target:  5'- uGGCGCGGCUG---GCCGGgaucACAGUGCc -3'
miRNA:   3'- -CCGUGCUGAUcgaCGGCCa---UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 95604 0.73 0.499833
Target:  5'- cGCAcCGGCcGGCUGCUGG-ACcGCGCg -3'
miRNA:   3'- cCGU-GCUGaUCGACGGCCaUGuCGCG- -5'
23738 3' -56.1 NC_005261.1 + 97733 0.73 0.499833
Target:  5'- gGGCuaACGGCUGGCagggGCgGGgcgggcucgGCGGCGCg -3'
miRNA:   3'- -CCG--UGCUGAUCGa---CGgCCa--------UGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.