Results 41 - 60 of 377 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23738 | 3' | -56.1 | NC_005261.1 | + | 95604 | 0.73 | 0.499833 |
Target: 5'- cGCAcCGGCcGGCUGCUGG-ACcGCGCg -3' miRNA: 3'- cCGU-GCUGaUCGACGGCCaUGuCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 64881 | 0.73 | 0.499833 |
Target: 5'- aGCgGCGGCgggAGC-GCCGGguccaGCAGCGCg -3' miRNA: 3'- cCG-UGCUGa--UCGaCGGCCa----UGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 152 | 0.73 | 0.509549 |
Target: 5'- uGGCAgGGCUGGCggaguugGCgGGgcUGGCGCc -3' miRNA: 3'- -CCGUgCUGAUCGa------CGgCCauGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 13133 | 0.73 | 0.509549 |
Target: 5'- gGGCGCGugUGGU---CGGUgACGGCGCg -3' miRNA: 3'- -CCGUGCugAUCGacgGCCA-UGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 137835 | 0.73 | 0.509549 |
Target: 5'- uGGCAgGGCUGGCggaguugGCgGGgcUGGCGCc -3' miRNA: 3'- -CCGUgCUGAUCGa------CGgCCauGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 69297 | 0.73 | 0.519344 |
Target: 5'- cGGCGCGG--GGC-GCCGGUgGCGGCGg -3' miRNA: 3'- -CCGUGCUgaUCGaCGGCCA-UGUCGCg -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 118237 | 0.73 | 0.525256 |
Target: 5'- cGGcCGCGGCcuacgccgucugcGGCgUGCCGGUGCAcuGCGCg -3' miRNA: 3'- -CC-GUGCUGa------------UCG-ACGGCCAUGU--CGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 97682 | 0.73 | 0.529212 |
Target: 5'- gGGcUugGGCggGGCUGCCGGgGCGGUGg -3' miRNA: 3'- -CC-GugCUGa-UCGACGGCCaUGUCGCg -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 81680 | 0.73 | 0.529212 |
Target: 5'- gGGCACGACUGccGCccGuCCGGgccCGGCGCc -3' miRNA: 3'- -CCGUGCUGAU--CGa-C-GGCCau-GUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 135746 | 0.73 | 0.529212 |
Target: 5'- uGGCGCGcCUcAGCcGCgCGGUGCgcuccGGCGCa -3' miRNA: 3'- -CCGUGCuGA-UCGaCG-GCCAUG-----UCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 128839 | 0.73 | 0.529212 |
Target: 5'- cGCGCGGCUGGCcGCCacGGUGCccCGCc -3' miRNA: 3'- cCGUGCUGAUCGaCGG--CCAUGucGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 109221 | 0.73 | 0.529212 |
Target: 5'- aGGCGCGGCacGCcGCgCGcUGCAGCGCg -3' miRNA: 3'- -CCGUGCUGauCGaCG-GCcAUGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 97843 | 0.73 | 0.529212 |
Target: 5'- gGGgGCGGCgGGCgccGCCGcgGCAGCGCg -3' miRNA: 3'- -CCgUGCUGaUCGa--CGGCcaUGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 66446 | 0.73 | 0.529212 |
Target: 5'- aGCGCGGCgcGCgccGCCGGUcccGCcaGGCGCg -3' miRNA: 3'- cCGUGCUGauCGa--CGGCCA---UG--UCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 29870 | 0.73 | 0.529212 |
Target: 5'- cGGCGcCGGCgccGCUGCCGc--CAGCGCc -3' miRNA: 3'- -CCGU-GCUGau-CGACGGCcauGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 51700 | 0.73 | 0.539148 |
Target: 5'- cGCACGACUacuuccaccAGCUGCgGGggguCGuGCGCa -3' miRNA: 3'- cCGUGCUGA---------UCGACGgCCau--GU-CGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 83295 | 0.73 | 0.539148 |
Target: 5'- aGGCACGGCUGcgcggggucguGCaGCuCGG-GCGGCGCc -3' miRNA: 3'- -CCGUGCUGAU-----------CGaCG-GCCaUGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 37184 | 0.73 | 0.539148 |
Target: 5'- gGGCGCuGCUGGCggcGCUGcugGCGGCGCu -3' miRNA: 3'- -CCGUGcUGAUCGa--CGGCca-UGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 101444 | 0.72 | 0.548144 |
Target: 5'- cGGCGCGguccagcGCUGGCcccagcgccGCCGGcgGCGGCGUg -3' miRNA: 3'- -CCGUGC-------UGAUCGa--------CGGCCa-UGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 44021 | 0.72 | 0.549147 |
Target: 5'- cGGCGCGGCgGGCgGCCGccgcGCGGCGg -3' miRNA: 3'- -CCGUGCUGaUCGaCGGCca--UGUCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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