Results 61 - 80 of 377 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23738 | 3' | -56.1 | NC_005261.1 | + | 52943 | 0.72 | 0.549147 |
Target: 5'- uGGCGCcagucaaacucgGAgcAGCgccgcGCCGGUGCGGCGCc -3' miRNA: 3'- -CCGUG------------CUgaUCGa----CGGCCAUGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 44021 | 0.72 | 0.549147 |
Target: 5'- cGGCGCGGCgGGCgGCCGccgcGCGGCGg -3' miRNA: 3'- -CCGUGCUGaUCGaCGGCca--UGUCGCg -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 3854 | 0.72 | 0.549147 |
Target: 5'- cGGCGcCGGCgccGCgcgGCCGGcgagcACGGCGCg -3' miRNA: 3'- -CCGU-GCUGau-CGa--CGGCCa----UGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 133310 | 0.72 | 0.56324 |
Target: 5'- aGG-ACGACUGGCugcucgcgcagcuccUGCCGGcACGcGCGCg -3' miRNA: 3'- -CCgUGCUGAUCG---------------ACGGCCaUGU-CGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 79823 | 0.72 | 0.56931 |
Target: 5'- cGCGCGGCggcgcGGCgGCCaGcGCAGCGCu -3' miRNA: 3'- cCGUGCUGa----UCGaCGGcCaUGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 28245 | 0.72 | 0.56931 |
Target: 5'- cGCGCGAUagcgggGGCUGCuCGGgGgGGCGCu -3' miRNA: 3'- cCGUGCUGa-----UCGACG-GCCaUgUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 104712 | 0.72 | 0.579461 |
Target: 5'- cGGCugGACggccgagGGCgcgucgUGCCGcGUGCGcGCGCc -3' miRNA: 3'- -CCGugCUGa------UCG------ACGGC-CAUGU-CGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 32469 | 0.72 | 0.58863 |
Target: 5'- gGGCACgGACUcgGGCUucccgggGCCGGcgACGGCGg -3' miRNA: 3'- -CCGUG-CUGA--UCGA-------CGGCCa-UGUCGCg -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 33053 | 0.72 | 0.58965 |
Target: 5'- gGGcCAgGACUcGGC-GCCGGggacGCGGCGCu -3' miRNA: 3'- -CC-GUgCUGA-UCGaCGGCCa---UGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 108198 | 0.72 | 0.58965 |
Target: 5'- gGGCGCGAg-AGCUgcGCCaGcACGGCGCg -3' miRNA: 3'- -CCGUGCUgaUCGA--CGGcCaUGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 14343 | 0.72 | 0.598847 |
Target: 5'- cGGCagcagcaGCGGCagcAGCcgcgGCCGGgGCGGCGCg -3' miRNA: 3'- -CCG-------UGCUGa--UCGa---CGGCCaUGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 86212 | 0.72 | 0.59987 |
Target: 5'- cGGCGCGcCgaaccggGGCaGCCGGUgccgcagccgauGCAGCGUc -3' miRNA: 3'- -CCGUGCuGa------UCGaCGGCCA------------UGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 60053 | 0.72 | 0.603966 |
Target: 5'- cGGCgGCGGCgaagAGCggcgGCCGGUccgcgggcugcguggGCAGCaGCa -3' miRNA: 3'- -CCG-UGCUGa---UCGa---CGGCCA---------------UGUCG-CG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 88806 | 0.71 | 0.610115 |
Target: 5'- aGCAgGACgccGGCgGCgGGgcgGCGGCGCg -3' miRNA: 3'- cCGUgCUGa--UCGaCGgCCa--UGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 111610 | 0.71 | 0.610115 |
Target: 5'- gGGCGCGGCUgGGCUGC-GGcGCcGUGCc -3' miRNA: 3'- -CCGUGCUGA-UCGACGgCCaUGuCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 39893 | 0.71 | 0.610115 |
Target: 5'- cGCGCGGCUGuGCaGCUGGcGC-GCGCg -3' miRNA: 3'- cCGUGCUGAU-CGaCGGCCaUGuCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 57280 | 0.71 | 0.610115 |
Target: 5'- cGCGCGGC-AGCUGCuCGcGaGCAGcCGCg -3' miRNA: 3'- cCGUGCUGaUCGACG-GC-CaUGUC-GCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 1174 | 0.71 | 0.619349 |
Target: 5'- cGGCccgcgccGCGGCcggGGCcgggGCCGGgcGCGGCGCg -3' miRNA: 3'- -CCG-------UGCUGa--UCGa---CGGCCa-UGUCGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 126702 | 0.71 | 0.620376 |
Target: 5'- cGGUGCGGgaAGCgGCUGGUucGCGuGCGCg -3' miRNA: 3'- -CCGUGCUgaUCGaCGGCCA--UGU-CGCG- -5' |
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23738 | 3' | -56.1 | NC_005261.1 | + | 30125 | 0.71 | 0.620376 |
Target: 5'- uGGCGCGGCccGCgacgCGGUGgAGCGCg -3' miRNA: 3'- -CCGUGCUGauCGacg-GCCAUgUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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