miRNA display CGI


Results 21 - 40 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 3' -56.1 NC_005261.1 + 5123 0.7 0.66143
Target:  5'- cGGCGCGGgcGGCccGCCGGcGCucGCGCg -3'
miRNA:   3'- -CCGUGCUgaUCGa-CGGCCaUGu-CGCG- -5'
23738 3' -56.1 NC_005261.1 + 5514 0.74 0.471199
Target:  5'- cGGCAgCGGCggcgaGGCcGCCGGcuuCGGCGCg -3'
miRNA:   3'- -CCGU-GCUGa----UCGaCGGCCau-GUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 5828 0.68 0.807257
Target:  5'- cGGC-CGAUgcGC-GCCGGguUACGGCGg -3'
miRNA:   3'- -CCGuGCUGauCGaCGGCC--AUGUCGCg -5'
23738 3' -56.1 NC_005261.1 + 5896 0.67 0.824647
Target:  5'- cGGCugG-CUAGCUcgGCCGGc-CGGCugGCu -3'
miRNA:   3'- -CCGugCuGAUCGA--CGGCCauGUCG--CG- -5'
23738 3' -56.1 NC_005261.1 + 5959 0.67 0.824647
Target:  5'- cGGCugG-CUGGCUaGCuCGGcuccucUGCcGCGCg -3'
miRNA:   3'- -CCGugCuGAUCGA-CG-GCC------AUGuCGCG- -5'
23738 3' -56.1 NC_005261.1 + 7881 0.67 0.864907
Target:  5'- gGGCAgCGAgcGGCUcuguuCCGGcGCGGCGCc -3'
miRNA:   3'- -CCGU-GCUgaUCGAc----GGCCaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 9122 0.67 0.857252
Target:  5'- gGGCcgccGgGACUGGggGCgGGUGCAG-GCa -3'
miRNA:   3'- -CCG----UgCUGAUCgaCGgCCAUGUCgCG- -5'
23738 3' -56.1 NC_005261.1 + 9157 0.66 0.886585
Target:  5'- gGGCugGGacCUGGCgccgcccgGCCaGGUACGuGgGCg -3'
miRNA:   3'- -CCGugCU--GAUCGa-------CGG-CCAUGU-CgCG- -5'
23738 3' -56.1 NC_005261.1 + 10507 0.74 0.471199
Target:  5'- cGCGCGGCcgccGCUGCgGGccccGCGGCGCg -3'
miRNA:   3'- cCGUGCUGau--CGACGgCCa---UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 12104 0.7 0.712142
Target:  5'- aGGCGCGGCgccAGCUcuagcGCCaGG-AUGGCGCc -3'
miRNA:   3'- -CCGUGCUGa--UCGA-----CGG-CCaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 12307 0.68 0.816036
Target:  5'- gGGCACgGGCgcGUaGCCGGcggGCGcGCGCu -3'
miRNA:   3'- -CCGUG-CUGauCGaCGGCCa--UGU-CGCG- -5'
23738 3' -56.1 NC_005261.1 + 12343 0.67 0.833082
Target:  5'- cGGCGCGGCc-GCcGCCGcGgcggcaacCGGCGCg -3'
miRNA:   3'- -CCGUGCUGauCGaCGGC-Cau------GUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 12425 0.67 0.849391
Target:  5'- aGGgGCGGCggagGGCUugcggcgucgGCCGcGU-CGGCGCc -3'
miRNA:   3'- -CCgUGCUGa---UCGA----------CGGC-CAuGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 12641 0.7 0.702101
Target:  5'- cGGCGCGGuCUGGg-GCCGcgcCGGCGCg -3'
miRNA:   3'- -CCGUGCU-GAUCgaCGGCcauGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 13133 0.73 0.509549
Target:  5'- gGGCGCGugUGGU---CGGUgACGGCGCg -3'
miRNA:   3'- -CCGUGCugAUCGacgGCCA-UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 14343 0.72 0.598847
Target:  5'- cGGCagcagcaGCGGCagcAGCcgcgGCCGGgGCGGCGCg -3'
miRNA:   3'- -CCG-------UGCUGa--UCGa---CGGCCaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 14459 0.69 0.761137
Target:  5'- cGCGCGGCggAGCUcgcGCUGGUccuccaacGCGGUGUa -3'
miRNA:   3'- cCGUGCUGa-UCGA---CGGCCA--------UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 14843 0.66 0.872352
Target:  5'- aGCACGGC-AGCaGgCGG--CGGCGCa -3'
miRNA:   3'- cCGUGCUGaUCGaCgGCCauGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 14973 0.66 0.879579
Target:  5'- uGGgGCGACUGcGCgGCCGcGccgGCcGCGCc -3'
miRNA:   3'- -CCgUGCUGAU-CGaCGGC-Ca--UGuCGCG- -5'
23738 3' -56.1 NC_005261.1 + 15490 0.66 0.893364
Target:  5'- cGCGCcGCUcGCUGCgGGcGgGGCGUg -3'
miRNA:   3'- cCGUGcUGAuCGACGgCCaUgUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.