miRNA display CGI


Results 41 - 60 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 3' -56.1 NC_005261.1 + 17171 0.69 0.761137
Target:  5'- cGGCGCgGGCgugGGCagcccUGCCGcGgcggcgaGCAGCGCg -3'
miRNA:   3'- -CCGUG-CUGa--UCG-----ACGGC-Ca------UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 18426 0.68 0.770628
Target:  5'- aGCGCaGACgucCUcGCCGG-GCAGCGCg -3'
miRNA:   3'- cCGUG-CUGaucGA-CGGCCaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 19055 0.7 0.691999
Target:  5'- aGGCAgGGgUacgGGCUGCgCGGcucuCGGCGCg -3'
miRNA:   3'- -CCGUgCUgA---UCGACG-GCCau--GUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 19166 0.71 0.650155
Target:  5'- cGGCggaucacGCGAagcAGCUGCCGGgcGCAGuCGCc -3'
miRNA:   3'- -CCG-------UGCUga-UCGACGGCCa-UGUC-GCG- -5'
23738 3' -56.1 NC_005261.1 + 20423 0.67 0.864907
Target:  5'- aGGCACGGCgccuucCCGGgggGgAGCGCa -3'
miRNA:   3'- -CCGUGCUGaucgacGGCCa--UgUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 20509 0.66 0.893364
Target:  5'- gGGC-CGGCUAGggacGCCGGUcguugucuccgACcGCGCu -3'
miRNA:   3'- -CCGuGCUGAUCga--CGGCCA-----------UGuCGCG- -5'
23738 3' -56.1 NC_005261.1 + 20550 0.67 0.857252
Target:  5'- uGCugGACgUGGCgGCgGGcugcgcaGCGGCGCc -3'
miRNA:   3'- cCGugCUG-AUCGaCGgCCa------UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 20586 0.7 0.702101
Target:  5'- cGGCGCGGgUGGCcuacGUCGacACAGCGCc -3'
miRNA:   3'- -CCGUGCUgAUCGa---CGGCcaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 21189 0.66 0.882408
Target:  5'- uGGCGCGagcgcggccgcggacGCUGGCcccgGCCGcG-ACGGCGg -3'
miRNA:   3'- -CCGUGC---------------UGAUCGa---CGGC-CaUGUCGCg -5'
23738 3' -56.1 NC_005261.1 + 21644 0.69 0.732011
Target:  5'- cGGCGCgGACgccGCUgccgcaccGCCGGUAC-GUGCu -3'
miRNA:   3'- -CCGUG-CUGau-CGA--------CGGCCAUGuCGCG- -5'
23738 3' -56.1 NC_005261.1 + 21766 0.68 0.789227
Target:  5'- cGCGCGcCgGGCgaGCCGccGCGGCGCg -3'
miRNA:   3'- cCGUGCuGaUCGa-CGGCcaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 22587 0.67 0.864907
Target:  5'- cGGCggagGCGGCgcacGCUGCCGGcGCAucucgucccgucGCGUc -3'
miRNA:   3'- -CCG----UGCUGau--CGACGGCCaUGU------------CGCG- -5'
23738 3' -56.1 NC_005261.1 + 22698 0.66 0.879579
Target:  5'- gGGCccgGCGACgaggccgucgAGgaGCCGGaggacCAGCGCc -3'
miRNA:   3'- -CCG---UGCUGa---------UCgaCGGCCau---GUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 22806 0.66 0.892696
Target:  5'- cGGCcgGCGGCggcGCUGCCGccGCcgccguuGGCGCc -3'
miRNA:   3'- -CCG--UGCUGau-CGACGGCcaUG-------UCGCG- -5'
23738 3' -56.1 NC_005261.1 + 23165 0.7 0.671655
Target:  5'- gGGCcCGGCaGGCgcGCCGGgggcgACAGCGa -3'
miRNA:   3'- -CCGuGCUGaUCGa-CGGCCa----UGUCGCg -5'
23738 3' -56.1 NC_005261.1 + 23207 0.7 0.671655
Target:  5'- gGGCccgcaGCGGCggccGCgcgcaaaaGCCGGUGCAGCGg -3'
miRNA:   3'- -CCG-----UGCUGau--CGa-------CGGCCAUGUCGCg -5'
23738 3' -56.1 NC_005261.1 + 23331 0.69 0.74182
Target:  5'- aGC-CGACgAGC-GCgCGGcGCAGCGCg -3'
miRNA:   3'- cCGuGCUGaUCGaCG-GCCaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 23595 0.69 0.740843
Target:  5'- cGGCGgugguggUGGCUGucgccgccGCUGCCGGggcGCGGCGg -3'
miRNA:   3'- -CCGU-------GCUGAU--------CGACGGCCa--UGUCGCg -5'
23738 3' -56.1 NC_005261.1 + 23777 0.67 0.841332
Target:  5'- gGGC-CGGCUagggugGGCUcGCCGGgGCAG-GCc -3'
miRNA:   3'- -CCGuGCUGA------UCGA-CGGCCaUGUCgCG- -5'
23738 3' -56.1 NC_005261.1 + 23834 0.67 0.841332
Target:  5'- gGGC-CGGCUagggugGGCUcGCCGGgGCAG-GCc -3'
miRNA:   3'- -CCGuGCUGA------UCGA-CGGCCaUGUCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.