miRNA display CGI


Results 61 - 80 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 3' -56.1 NC_005261.1 + 26106 0.66 0.879579
Target:  5'- aGGCA-GAUccAGCgGCCGGguaaGCAGgCGCg -3'
miRNA:   3'- -CCGUgCUGa-UCGaCGGCCa---UGUC-GCG- -5'
23738 3' -56.1 NC_005261.1 + 27359 0.68 0.816036
Target:  5'- cGGCGCcgGACcGGCgcgagGCCGGUggGCAGgGg -3'
miRNA:   3'- -CCGUG--CUGaUCGa----CGGCCA--UGUCgCg -5'
23738 3' -56.1 NC_005261.1 + 28245 0.72 0.56931
Target:  5'- cGCGCGAUagcgggGGCUGCuCGGgGgGGCGCu -3'
miRNA:   3'- cCGUGCUGa-----UCGACG-GCCaUgUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 28836 0.66 0.897973
Target:  5'- cGGcCGCGGCUgaggcggccgucguGGCcGCCgcccuugaGGcUGCGGCGCg -3'
miRNA:   3'- -CC-GUGCUGA--------------UCGaCGG--------CC-AUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 29584 0.76 0.374152
Target:  5'- cGGCGCGuGCagGGCUGCCGGggccACAGCu- -3'
miRNA:   3'- -CCGUGC-UGa-UCGACGGCCa---UGUCGcg -5'
23738 3' -56.1 NC_005261.1 + 29636 0.67 0.823794
Target:  5'- cGGCGCcGCU-GCcGCCGGUcggggacgccaugGCcGCGCa -3'
miRNA:   3'- -CCGUGcUGAuCGaCGGCCA-------------UGuCGCG- -5'
23738 3' -56.1 NC_005261.1 + 29870 0.73 0.529212
Target:  5'- cGGCGcCGGCgccGCUGCCGc--CAGCGCc -3'
miRNA:   3'- -CCGU-GCUGau-CGACGGCcauGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 29962 0.67 0.841332
Target:  5'- aGGCGCuAgaGGCgGCgCGGUGCgccgccGGCGCg -3'
miRNA:   3'- -CCGUGcUgaUCGaCG-GCCAUG------UCGCG- -5'
23738 3' -56.1 NC_005261.1 + 30005 0.71 0.640917
Target:  5'- cGGCGCGuCUgAGCUcCCGGUgcucucggcuGCAGCGg -3'
miRNA:   3'- -CCGUGCuGA-UCGAcGGCCA----------UGUCGCg -5'
23738 3' -56.1 NC_005261.1 + 30125 0.71 0.620376
Target:  5'- uGGCGCGGCccGCgacgCGGUGgAGCGCg -3'
miRNA:   3'- -CCGUGCUGauCGacg-GCCAUgUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 30226 0.69 0.732011
Target:  5'- cGGCGCGAaccgUGGCcccgcugGCgCGGUacucgacgcGCGGCGCg -3'
miRNA:   3'- -CCGUGCUg---AUCGa------CG-GCCA---------UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 30334 0.75 0.434368
Target:  5'- cGGCGCGGCUGGCgGCCGcGcucGCGGCc- -3'
miRNA:   3'- -CCGUGCUGAUCGaCGGC-Ca--UGUCGcg -5'
23738 3' -56.1 NC_005261.1 + 30367 0.68 0.789227
Target:  5'- aGGC-CGGC--GC-GCCGGgcgccGCGGCGCg -3'
miRNA:   3'- -CCGuGCUGauCGaCGGCCa----UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 31034 0.69 0.74182
Target:  5'- aGC-CGGCgcGCcGCCGGgucccCAGCGCg -3'
miRNA:   3'- cCGuGCUGauCGaCGGCCau---GUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 31182 0.66 0.892696
Target:  5'- cGGCGCuGGCggccuaCUGCCgccccgaGGUcGCGGCGCg -3'
miRNA:   3'- -CCGUG-CUGauc---GACGG-------CCA-UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 31324 0.66 0.885894
Target:  5'- gGGCGCG-CUcgccgccAGCgcGCCGcugcgGCGGCGCg -3'
miRNA:   3'- -CCGUGCuGA-------UCGa-CGGCca---UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 31407 0.68 0.807257
Target:  5'- uGGUgcucuACGACccGCUGcCCGGggaggcgcugGCGGCGCc -3'
miRNA:   3'- -CCG-----UGCUGauCGAC-GGCCa---------UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 31472 0.73 0.499833
Target:  5'- cGGCcUGAgUGGCcGCCGGUgcGCGGCGg -3'
miRNA:   3'- -CCGuGCUgAUCGaCGGCCA--UGUCGCg -5'
23738 3' -56.1 NC_005261.1 + 31651 0.67 0.83057
Target:  5'- cGGCGCGGucgaguaccucugcCU-GCgGCUGGccGCGGCGCg -3'
miRNA:   3'- -CCGUGCU--------------GAuCGaCGGCCa-UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 31764 0.71 0.634754
Target:  5'- cGCACGugUAccugcgcgccgcgguGCUGCCcgcGGcGCAGUGCg -3'
miRNA:   3'- cCGUGCugAU---------------CGACGG---CCaUGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.