miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 3' -56.1 NC_005261.1 + 138130 0.66 0.879579
Target:  5'- gGGcCGCGAC-GGCcgGCgGG-AUGGCGCg -3'
miRNA:   3'- -CC-GUGCUGaUCGa-CGgCCaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 138028 0.69 0.74182
Target:  5'- cGGCGCGGCccGGC-GgCGGUgGCGGCGg -3'
miRNA:   3'- -CCGUGCUGa-UCGaCgGCCA-UGUCGCg -5'
23738 3' -56.1 NC_005261.1 + 137971 0.69 0.732011
Target:  5'- cGGCuGCGGCggcGGCUGCggcggCGGcUGCGGCGg -3'
miRNA:   3'- -CCG-UGCUGa--UCGACG-----GCC-AUGUCGCg -5'
23738 3' -56.1 NC_005261.1 + 137935 0.69 0.732011
Target:  5'- cGGCuGCGGCggcGGCUGCggcggCGGcUGCGGCGg -3'
miRNA:   3'- -CCG-UGCUGa--UCGACG-----GCC-AUGUCGCg -5'
23738 3' -56.1 NC_005261.1 + 137835 0.73 0.509549
Target:  5'- uGGCAgGGCUGGCggaguugGCgGGgcUGGCGCc -3'
miRNA:   3'- -CCGUgCUGAUCGa------CGgCCauGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 137064 0.66 0.872352
Target:  5'- aGGCGCGGa-GGC-GCgGGcacccaugGCGGCGCa -3'
miRNA:   3'- -CCGUGCUgaUCGaCGgCCa-------UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 136995 0.67 0.864907
Target:  5'- uGGCAgguCGAUcguGCgGCCGG-AgAGCGCg -3'
miRNA:   3'- -CCGU---GCUGau-CGaCGGCCaUgUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 136883 0.67 0.856475
Target:  5'- aGGCGCGgccgaugaaguguACUGGCgugguguggGCCGcGcggccGCGGCGCa -3'
miRNA:   3'- -CCGUGC-------------UGAUCGa--------CGGC-Ca----UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 135746 0.73 0.529212
Target:  5'- uGGCGCGcCUcAGCcGCgCGGUGCgcuccGGCGCa -3'
miRNA:   3'- -CCGUGCuGA-UCGaCG-GCCAUG-----UCGCG- -5'
23738 3' -56.1 NC_005261.1 + 135453 0.68 0.807257
Target:  5'- cGGCGCGGgc-GCUGCgGGaccucgUACuGCGCg -3'
miRNA:   3'- -CCGUGCUgauCGACGgCC------AUGuCGCG- -5'
23738 3' -56.1 NC_005261.1 + 135193 0.67 0.849391
Target:  5'- cGCGCGG--AGCaugGCCGagGCGGCGCa -3'
miRNA:   3'- cCGUGCUgaUCGa--CGGCcaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 135009 0.67 0.849391
Target:  5'- uGGCGCGGCgGGCccgcacgcgGCCGcgGCGGCGa -3'
miRNA:   3'- -CCGUGCUGaUCGa--------CGGCcaUGUCGCg -5'
23738 3' -56.1 NC_005261.1 + 134441 0.67 0.841332
Target:  5'- -uCGCGG--GGCUGCUGGUGaaGGCGCu -3'
miRNA:   3'- ccGUGCUgaUCGACGGCCAUg-UCGCG- -5'
23738 3' -56.1 NC_005261.1 + 134198 0.74 0.484461
Target:  5'- uGGCGCGGCUcggcgcgcgggucgcGGCgGCCGG--CAGCGUc -3'
miRNA:   3'- -CCGUGCUGA---------------UCGaCGGCCauGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 134076 0.68 0.810788
Target:  5'- cGCGCGGCUcaugugcgagcucucGGCgcGCCGGcGC-GCGCu -3'
miRNA:   3'- cCGUGCUGA---------------UCGa-CGGCCaUGuCGCG- -5'
23738 3' -56.1 NC_005261.1 + 133902 0.68 0.816036
Target:  5'- cGGCGCGcugcuggcCUGGCUGCU-GUACGuCGCg -3'
miRNA:   3'- -CCGUGCu-------GAUCGACGGcCAUGUcGCG- -5'
23738 3' -56.1 NC_005261.1 + 133832 0.66 0.872352
Target:  5'- uGCGCGGCcgcguGCgcGCCGuGgcCGGCGCg -3'
miRNA:   3'- cCGUGCUGau---CGa-CGGC-CauGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 133707 0.7 0.712142
Target:  5'- uGCGCGACcccGGCgccgucuacGUCGGgGCGGCGCg -3'
miRNA:   3'- cCGUGCUGa--UCGa--------CGGCCaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 133364 0.66 0.872352
Target:  5'- cGCAgGGCUucGGCUGCC--UGC-GCGCg -3'
miRNA:   3'- cCGUgCUGA--UCGACGGccAUGuCGCG- -5'
23738 3' -56.1 NC_005261.1 + 133310 0.72 0.56324
Target:  5'- aGG-ACGACUGGCugcucgcgcagcuccUGCCGGcACGcGCGCg -3'
miRNA:   3'- -CCgUGCUGAUCG---------------ACGGCCaUGU-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.