miRNA display CGI


Results 21 - 40 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 3' -56.1 NC_005261.1 + 132646 0.68 0.807257
Target:  5'- gGGCGCGGCggcccUAGCgGCCGcGUgugGGUGCg -3'
miRNA:   3'- -CCGUGCUG-----AUCGaCGGC-CAug-UCGCG- -5'
23738 3' -56.1 NC_005261.1 + 132511 0.68 0.816036
Target:  5'- -cCGCGACgcgGGCUGggaCGaGUACgAGCGCg -3'
miRNA:   3'- ccGUGCUGa--UCGACg--GC-CAUG-UCGCG- -5'
23738 3' -56.1 NC_005261.1 + 132159 0.66 0.893364
Target:  5'- aGCGCGcCgccGCUGCag--GCAGCGCg -3'
miRNA:   3'- cCGUGCuGau-CGACGgccaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 131767 0.68 0.798318
Target:  5'- cGGCGCGGCgGGCgcgccGCUGGgccccgACGccGCGCc -3'
miRNA:   3'- -CCGUGCUGaUCGa----CGGCCa-----UGU--CGCG- -5'
23738 3' -56.1 NC_005261.1 + 130559 0.66 0.899913
Target:  5'- uGCugGGC-GGCccGCCGGgcggaAGCGCc -3'
miRNA:   3'- cCGugCUGaUCGa-CGGCCaug--UCGCG- -5'
23738 3' -56.1 NC_005261.1 + 129708 0.67 0.857252
Target:  5'- gGGCcggaGGCaGGCccGCCGGcUGCAGCGg -3'
miRNA:   3'- -CCGug--CUGaUCGa-CGGCC-AUGUCGCg -5'
23738 3' -56.1 NC_005261.1 + 129204 0.81 0.188228
Target:  5'- uGGCGCaGCUGcuuCUGCUGGUGCGGCGCc -3'
miRNA:   3'- -CCGUGcUGAUc--GACGGCCAUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 128839 0.73 0.529212
Target:  5'- cGCGCGGCUGGCcGCCacGGUGCccCGCc -3'
miRNA:   3'- cCGUGCUGAUCGaCGG--CCAUGucGCG- -5'
23738 3' -56.1 NC_005261.1 + 128109 0.69 0.732011
Target:  5'- cGGCGCGGCgcggGGUcggGCCGaGUGCGGagagagGCg -3'
miRNA:   3'- -CCGUGCUGa---UCGa--CGGC-CAUGUCg-----CG- -5'
23738 3' -56.1 NC_005261.1 + 127769 0.69 0.74182
Target:  5'- gGGCGCGAagacgcccGGCUGCucgagcggCGGgcCGGCGCc -3'
miRNA:   3'- -CCGUGCUga------UCGACG--------GCCauGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 127681 0.71 0.640917
Target:  5'- cGGCgGCGGCc-GCUGCCccgGCGGCGCc -3'
miRNA:   3'- -CCG-UGCUGauCGACGGccaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 127633 0.71 0.620376
Target:  5'- cGGaCGCGACggcGGCggcGCCGGgg-GGCGCg -3'
miRNA:   3'- -CC-GUGCUGa--UCGa--CGGCCaugUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 127492 0.67 0.841332
Target:  5'- cGCugGCGGCUGcCUGCCGGgcguacuCGGCGg -3'
miRNA:   3'- cCG--UGCUGAUcGACGGCCau-----GUCGCg -5'
23738 3' -56.1 NC_005261.1 + 126939 0.75 0.416589
Target:  5'- aGCGCGGCcaggGGC-GCCGGgcgcgggggcgGCAGCGCg -3'
miRNA:   3'- cCGUGCUGa---UCGaCGGCCa----------UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 126787 0.67 0.864907
Target:  5'- -cCGCGuCUGcGuCUGCCGaGaGCAGCGCg -3'
miRNA:   3'- ccGUGCuGAU-C-GACGGC-CaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 126702 0.71 0.620376
Target:  5'- cGGUGCGGgaAGCgGCUGGUucGCGuGCGCg -3'
miRNA:   3'- -CCGUGCUgaUCGaCGGCCA--UGU-CGCG- -5'
23738 3' -56.1 NC_005261.1 + 125400 0.67 0.849391
Target:  5'- cGGUACGuuccggAGCgGCgCGG-GCGGCGCu -3'
miRNA:   3'- -CCGUGCuga---UCGaCG-GCCaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 125020 0.66 0.879579
Target:  5'- uGCGCuccaGCaGGCU-CCGGUGgGGCGCu -3'
miRNA:   3'- cCGUGc---UGaUCGAcGGCCAUgUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 123884 0.66 0.879579
Target:  5'- uGGCGCGcACUucgcggaaGGCcGCCGcuGUGgGGUGCg -3'
miRNA:   3'- -CCGUGC-UGA--------UCGaCGGC--CAUgUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 123188 0.66 0.872352
Target:  5'- uGGCugGugUgggcggacccAGCcGCCGcGUA-AGCGCg -3'
miRNA:   3'- -CCGugCugA----------UCGaCGGC-CAUgUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.