miRNA display CGI


Results 41 - 60 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 3' -56.1 NC_005261.1 + 122908 0.69 0.722116
Target:  5'- cGGgACGGCguuggAGCgcacGCCGa-GCAGCGCg -3'
miRNA:   3'- -CCgUGCUGa----UCGa---CGGCcaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 121816 0.75 0.407867
Target:  5'- uGGCugGGCUcugcgGGCcGCCGcgGCGGCGCa -3'
miRNA:   3'- -CCGugCUGA-----UCGaCGGCcaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 121783 0.7 0.681848
Target:  5'- uGGcCGCGGCcGGCggGCUGGgcagGgGGCGCg -3'
miRNA:   3'- -CC-GUGCUGaUCGa-CGGCCa---UgUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 121466 0.66 0.892696
Target:  5'- uGGCGagcuccuCGGCguaccGGCUGCCGccACGGgGCg -3'
miRNA:   3'- -CCGU-------GCUGa----UCGACGGCcaUGUCgCG- -5'
23738 3' -56.1 NC_005261.1 + 121410 0.68 0.789227
Target:  5'- aGUGCGAC-GGCUGCCGccgccgcUACGGgGCg -3'
miRNA:   3'- cCGUGCUGaUCGACGGCc------AUGUCgCG- -5'
23738 3' -56.1 NC_005261.1 + 121124 0.66 0.893364
Target:  5'- gGGCGCGGa-GGC-GCgGGcGCgAGCGCg -3'
miRNA:   3'- -CCGUGCUgaUCGaCGgCCaUG-UCGCG- -5'
23738 3' -56.1 NC_005261.1 + 121075 0.69 0.722116
Target:  5'- uGCGCGGCgccGGCgGCCGc--CAGCGCc -3'
miRNA:   3'- cCGUGCUGa--UCGaCGGCcauGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 120614 0.68 0.792881
Target:  5'- cGGCGCcguggGGCUc-CUGCUGGUggcggcccugugccuGCGGCGCa -3'
miRNA:   3'- -CCGUG-----CUGAucGACGGCCA---------------UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 120002 0.75 0.425423
Target:  5'- gGGCGcCGGCUAcGCgGCCGuGUGCcGCGCc -3'
miRNA:   3'- -CCGU-GCUGAU-CGaCGGC-CAUGuCGCG- -5'
23738 3' -56.1 NC_005261.1 + 119904 0.67 0.857252
Target:  5'- uGGCgccGCGACgcgGGC-GCCaaGUcGCAGCGCa -3'
miRNA:   3'- -CCG---UGCUGa--UCGaCGGc-CA-UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 119658 0.7 0.702101
Target:  5'- cGGCGCGcGCcuggAGCU-CUGGUucCAGCGCg -3'
miRNA:   3'- -CCGUGC-UGa---UCGAcGGCCAu-GUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 118931 0.78 0.291575
Target:  5'- gGGCGCGGCgccGCgcgGCUGGccGCGGCGCa -3'
miRNA:   3'- -CCGUGCUGau-CGa--CGGCCa-UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 118894 0.69 0.732011
Target:  5'- gGGCGCG-CUGGUgGCCugcgucugGGUcCGGCGCc -3'
miRNA:   3'- -CCGUGCuGAUCGaCGG--------CCAuGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 118828 0.76 0.366023
Target:  5'- gGGCGCGGCa--CUGCCGcucUGCGGCGCg -3'
miRNA:   3'- -CCGUGCUGaucGACGGCc--AUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 118672 0.66 0.872352
Target:  5'- gGGCugaggGCGGCgGGC-GCUGGcGCAcGCGCg -3'
miRNA:   3'- -CCG-----UGCUGaUCGaCGGCCaUGU-CGCG- -5'
23738 3' -56.1 NC_005261.1 + 118618 0.68 0.816036
Target:  5'- cGGC-CGuugccCUGGCcGCCGcgGCGGCGCu -3'
miRNA:   3'- -CCGuGCu----GAUCGaCGGCcaUGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 118453 0.68 0.816036
Target:  5'- cGGCGCuagaaGACacuuGCcauuacaagaucUGCCGGUauGCGGCGCu -3'
miRNA:   3'- -CCGUG-----CUGau--CG------------ACGGCCA--UGUCGCG- -5'
23738 3' -56.1 NC_005261.1 + 118379 0.68 0.807257
Target:  5'- gGGCGCGcggcccgaggcGCUGGCgGCCGcGggcgccGCAGcCGCg -3'
miRNA:   3'- -CCGUGC-----------UGAUCGaCGGC-Ca-----UGUC-GCG- -5'
23738 3' -56.1 NC_005261.1 + 118237 0.73 0.525256
Target:  5'- cGGcCGCGGCcuacgccgucugcGGCgUGCCGGUGCAcuGCGCg -3'
miRNA:   3'- -CC-GUGCUGa------------UCG-ACGGCCAUGU--CGCG- -5'
23738 3' -56.1 NC_005261.1 + 118042 0.67 0.841332
Target:  5'- cGGcCGCGACgcccgcGCUGgCGGccgcgGCAGCGg -3'
miRNA:   3'- -CC-GUGCUGau----CGACgGCCa----UGUCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.