miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 5' -55.4 NC_005261.1 + 110247 0.66 0.923875
Target:  5'- gGCGCGgcgcccgGGGgGCUGCGgGCCucccuCGUGg -3'
miRNA:   3'- -UGCGCaa-----CUUgUGGCGCgUGGu----GCAC- -5'
23738 5' -55.4 NC_005261.1 + 64275 0.66 0.923875
Target:  5'- cACGcCGUggUGcAGCGCCGCGU-CCAgCGUGc -3'
miRNA:   3'- -UGC-GCA--AC-UUGUGGCGCGuGGU-GCAC- -5'
23738 5' -55.4 NC_005261.1 + 12519 0.66 0.923875
Target:  5'- cCGCGcgGGGCcCCGCGCcGCCGCc-- -3'
miRNA:   3'- uGCGCaaCUUGuGGCGCG-UGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 23288 0.66 0.923875
Target:  5'- cACGCGUccgUGGGCACa--GCACC-CGUa -3'
miRNA:   3'- -UGCGCA---ACUUGUGgcgCGUGGuGCAc -5'
23738 5' -55.4 NC_005261.1 + 3866 0.66 0.923875
Target:  5'- cGCGCGgccggcGAGCACgGCGCGCagcuCGg- -3'
miRNA:   3'- -UGCGCaa----CUUGUGgCGCGUGgu--GCac -5'
23738 5' -55.4 NC_005261.1 + 130854 0.66 0.923875
Target:  5'- cGCGCGcgcccgGCCGgGCGCCGCGg- -3'
miRNA:   3'- -UGCGCaacuugUGGCgCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 29397 0.66 0.923875
Target:  5'- cCGCGa--GGCgGCCGCGCGCUACGc- -3'
miRNA:   3'- uGCGCaacUUG-UGGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 67505 0.66 0.923875
Target:  5'- cGCGCGUaGuAgGCCaGCGuCGCCGCGg- -3'
miRNA:   3'- -UGCGCAaCuUgUGG-CGC-GUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 122652 0.66 0.923875
Target:  5'- cGCGCGUacgUGGGCGCgaaGaGCAUCACGUu -3'
miRNA:   3'- -UGCGCA---ACUUGUGg--CgCGUGGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 85540 0.66 0.922215
Target:  5'- cGCGCGcgGGcggcuccgucugcgGCGCCGCgagguucgGCGCCGCGa- -3'
miRNA:   3'- -UGCGCaaCU--------------UGUGGCG--------CGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 1142 0.66 0.922215
Target:  5'- gACGCGgacgagGAgagcacuuccacgcGCGCCGgccCGCGCCGCGg- -3'
miRNA:   3'- -UGCGCaa----CU--------------UGUGGC---GCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 36785 0.66 0.920533
Target:  5'- gUGCGUUGcGCcgagacuuugcgccgGCCG-GCGCUACGUGc -3'
miRNA:   3'- uGCGCAACuUG---------------UGGCgCGUGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 92739 0.66 0.918256
Target:  5'- gGCGgGgacagcGAGCGCCGCccGCGCCGCu-- -3'
miRNA:   3'- -UGCgCaa----CUUGUGGCG--CGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 65921 0.66 0.918256
Target:  5'- aGCGgGUaGGGCAcCCGCGUgGCCugGUa -3'
miRNA:   3'- -UGCgCAaCUUGU-GGCGCG-UGGugCAc -5'
23738 5' -55.4 NC_005261.1 + 121909 0.66 0.918256
Target:  5'- aGCuCGUcUGcGCGCCGUGCGCCGCc-- -3'
miRNA:   3'- -UGcGCA-ACuUGUGGCGCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 57932 0.66 0.918256
Target:  5'- cGCGCGUgcUGcccGGCACCaGCGC-CCGUGUGc -3'
miRNA:   3'- -UGCGCA--AC---UUGUGG-CGCGuGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 124508 0.66 0.918256
Target:  5'- cCGgGUc---CACCGUGCuCCACGUGg -3'
miRNA:   3'- uGCgCAacuuGUGGCGCGuGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 136607 0.66 0.918256
Target:  5'- -aGCGUgGAGCGgCGCGCGCgCGCc-- -3'
miRNA:   3'- ugCGCAaCUUGUgGCGCGUG-GUGcac -5'
23738 5' -55.4 NC_005261.1 + 90204 0.66 0.918256
Target:  5'- aGCGCGggggcggcgGAGCGCCcuCGCGCgGCGg- -3'
miRNA:   3'- -UGCGCaa-------CUUGUGGc-GCGUGgUGCac -5'
23738 5' -55.4 NC_005261.1 + 103331 0.66 0.918256
Target:  5'- aGCGCGUccaGGCGCCgguacagcuccGCGCGCCGCu-- -3'
miRNA:   3'- -UGCGCAac-UUGUGG-----------CGCGUGGUGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.