miRNA display CGI


Results 21 - 40 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 5' -55.4 NC_005261.1 + 44587 0.66 0.904417
Target:  5'- uGCGCGUccGGCGCuucggcuuccugauCGCGCACCaggagGCGUGc -3'
miRNA:   3'- -UGCGCAacUUGUG--------------GCGCGUGG-----UGCAC- -5'
23738 5' -55.4 NC_005261.1 + 114600 0.66 0.896037
Target:  5'- cCGCGaggcuguggagaUUGAGCGCgaguuuauuuggucaCGCGCGCCGCGc- -3'
miRNA:   3'- uGCGC------------AACUUGUG---------------GCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 11196 0.66 0.899307
Target:  5'- uCGCGUUGuuguuuuuaaauaAACGCCGCGUGgccccCCGCGg- -3'
miRNA:   3'- uGCGCAAC-------------UUGUGGCGCGU-----GGUGCac -5'
23738 5' -55.4 NC_005261.1 + 58214 0.66 0.906294
Target:  5'- cGCGCGcc-AGCAgCGCGC-CCGCGg- -3'
miRNA:   3'- -UGCGCaacUUGUgGCGCGuGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 67505 0.66 0.923875
Target:  5'- cGCGCGUaGuAgGCCaGCGuCGCCGCGg- -3'
miRNA:   3'- -UGCGCAaCuUgUGG-CGC-GUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 101020 0.66 0.906294
Target:  5'- aGCGCGccugUGAACGCgGCcgGCAgCCGCGc- -3'
miRNA:   3'- -UGCGCa---ACUUGUGgCG--CGU-GGUGCac -5'
23738 5' -55.4 NC_005261.1 + 30184 0.66 0.899954
Target:  5'- uGCGCGccGAGgcggcCGCCGCGCuggaggcgGCCGCGcUGg -3'
miRNA:   3'- -UGCGCaaCUU-----GUGGCGCG--------UGGUGC-AC- -5'
23738 5' -55.4 NC_005261.1 + 97119 0.66 0.906294
Target:  5'- cCGCGgccgGAgGCGCCGCG-GCCACGc- -3'
miRNA:   3'- uGCGCaa--CU-UGUGGCGCgUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 88485 0.66 0.899954
Target:  5'- cCGCGccgGAgcGCGCCGCGCucgacCCGCGc- -3'
miRNA:   3'- uGCGCaa-CU--UGUGGCGCGu----GGUGCac -5'
23738 5' -55.4 NC_005261.1 + 16188 0.66 0.899954
Target:  5'- -gGCGggGGugGgCGgGgGCCGCGUGa -3'
miRNA:   3'- ugCGCaaCUugUgGCgCgUGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 82362 0.66 0.906294
Target:  5'- -gGCGUcgGcGCGCgCGCGCGCCGCc-- -3'
miRNA:   3'- ugCGCAa-CuUGUG-GCGCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 94736 0.66 0.906294
Target:  5'- -gGCGg-GGACACCGaCGC-CgACGUGg -3'
miRNA:   3'- ugCGCaaCUUGUGGC-GCGuGgUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 93504 0.66 0.906294
Target:  5'- cGCGCGaaccgcGGCGCCGUGUugGCCGCGa- -3'
miRNA:   3'- -UGCGCaac---UUGUGGCGCG--UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 40394 0.66 0.906294
Target:  5'- -aGCGggagGAcACGCUGCGCgacaggGCCACGUa -3'
miRNA:   3'- ugCGCaa--CU-UGUGGCGCG------UGGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 51479 0.66 0.893378
Target:  5'- -gGCGcUGAuCACCG-GCGCCGCGc- -3'
miRNA:   3'- ugCGCaACUuGUGGCgCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 64950 0.66 0.893378
Target:  5'- gGCGCGUgcGGCACUGUGUAcucguCCACGa- -3'
miRNA:   3'- -UGCGCAacUUGUGGCGCGU-----GGUGCac -5'
23738 5' -55.4 NC_005261.1 + 84975 0.66 0.899954
Target:  5'- gGCGCGUccgcGAuGCGCCgGCGCACC-CaGUGc -3'
miRNA:   3'- -UGCGCAa---CU-UGUGG-CGCGUGGuG-CAC- -5'
23738 5' -55.4 NC_005261.1 + 85635 0.66 0.911796
Target:  5'- cCGcCGUUGAgcagguccaugaaGCGCCGcCGCAgCACGg- -3'
miRNA:   3'- uGC-GCAACU-------------UGUGGC-GCGUgGUGCac -5'
23738 5' -55.4 NC_005261.1 + 100987 0.66 0.911796
Target:  5'- aGCGCGU----CGCCGCGCuccgccaGCCGCGc- -3'
miRNA:   3'- -UGCGCAacuuGUGGCGCG-------UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 53144 0.66 0.899954
Target:  5'- uACGCGc---GCGCCGuCGCGCCGcCGUc -3'
miRNA:   3'- -UGCGCaacuUGUGGC-GCGUGGU-GCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.