miRNA display CGI


Results 41 - 60 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 5' -55.4 NC_005261.1 + 84975 0.66 0.899954
Target:  5'- gGCGCGUccgcGAuGCGCCgGCGCACC-CaGUGc -3'
miRNA:   3'- -UGCGCAa---CU-UGUGG-CGCGUGGuG-CAC- -5'
23738 5' -55.4 NC_005261.1 + 97119 0.66 0.906294
Target:  5'- cCGCGgccgGAgGCGCCGCG-GCCACGc- -3'
miRNA:   3'- uGCGCaa--CU-UGUGGCGCgUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 11196 0.66 0.899307
Target:  5'- uCGCGUUGuuguuuuuaaauaAACGCCGCGUGgccccCCGCGg- -3'
miRNA:   3'- uGCGCAAC-------------UUGUGGCGCGU-----GGUGCac -5'
23738 5' -55.4 NC_005261.1 + 1719 0.66 0.906294
Target:  5'- cGCGCGgc-GGCACgG-GCACCGCGg- -3'
miRNA:   3'- -UGCGCaacUUGUGgCgCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 1847 0.66 0.912395
Target:  5'- cGCGCGaa-GGCGCCGggcccgaagaCGCGCCGCGa- -3'
miRNA:   3'- -UGCGCaacUUGUGGC----------GCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 101020 0.66 0.906294
Target:  5'- aGCGCGccugUGAACGCgGCcgGCAgCCGCGc- -3'
miRNA:   3'- -UGCGCa---ACUUGUGgCG--CGU-GGUGCac -5'
23738 5' -55.4 NC_005261.1 + 34213 0.66 0.912395
Target:  5'- gGCGCGUcGGACGCgGaCGCAgaCGCGg- -3'
miRNA:   3'- -UGCGCAaCUUGUGgC-GCGUg-GUGCac -5'
23738 5' -55.4 NC_005261.1 + 121909 0.66 0.918256
Target:  5'- aGCuCGUcUGcGCGCCGUGCGCCGCc-- -3'
miRNA:   3'- -UGcGCA-ACuUGUGGCGCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 92739 0.66 0.918256
Target:  5'- gGCGgGgacagcGAGCGCCGCccGCGCCGCu-- -3'
miRNA:   3'- -UGCgCaa----CUUGUGGCG--CGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 107020 0.66 0.906294
Target:  5'- cACGUGcccaagGAGCAggGCGCGCCACGc- -3'
miRNA:   3'- -UGCGCaa----CUUGUggCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 124508 0.66 0.918256
Target:  5'- cCGgGUc---CACCGUGCuCCACGUGg -3'
miRNA:   3'- uGCgCAacuuGUGGCGCGuGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 124261 0.66 0.918256
Target:  5'- cGCGCGgcGccGC-CCGCGCGCCcCGg- -3'
miRNA:   3'- -UGCGCaaCu-UGuGGCGCGUGGuGCac -5'
23738 5' -55.4 NC_005261.1 + 103331 0.66 0.918256
Target:  5'- aGCGCGUccaGGCGCCgguacagcuccGCGCGCCGCu-- -3'
miRNA:   3'- -UGCGCAac-UUGUGG-----------CGCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 85635 0.66 0.911796
Target:  5'- cCGcCGUUGAgcagguccaugaaGCGCCGcCGCAgCACGg- -3'
miRNA:   3'- uGC-GCAACU-------------UGUGGC-GCGUgGUGCac -5'
23738 5' -55.4 NC_005261.1 + 97846 0.66 0.912395
Target:  5'- -gGCGgcGGGCGCCGCcgcgGCAgCGCGg- -3'
miRNA:   3'- ugCGCaaCUUGUGGCG----CGUgGUGCac -5'
23738 5' -55.4 NC_005261.1 + 130787 0.66 0.912395
Target:  5'- cCGCGcUGGccGCACCGCGgACgACGc- -3'
miRNA:   3'- uGCGCaACU--UGUGGCGCgUGgUGCac -5'
23738 5' -55.4 NC_005261.1 + 95766 0.66 0.912395
Target:  5'- gGCGCcggGAGCcUCGCGCGCUGCGc- -3'
miRNA:   3'- -UGCGcaaCUUGuGGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 102325 0.66 0.911796
Target:  5'- cCGCGgcGcGCAgCCGCGCcagcucgGCCGCGUc -3'
miRNA:   3'- uGCGCaaCuUGU-GGCGCG-------UGGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 100987 0.66 0.911796
Target:  5'- aGCGCGU----CGCCGCGCuccgccaGCCGCGc- -3'
miRNA:   3'- -UGCGCAacuuGUGGCGCG-------UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 68113 0.66 0.899954
Target:  5'- uCGgGcugGAGCugCGCGgGCCGCGg- -3'
miRNA:   3'- uGCgCaa-CUUGugGCGCgUGGUGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.