miRNA display CGI


Results 61 - 80 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 5' -55.4 NC_005261.1 + 68113 0.66 0.899954
Target:  5'- uCGgGcugGAGCugCGCGgGCCGCGg- -3'
miRNA:   3'- uGCgCaa-CUUGugGCGCgUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 53144 0.66 0.899954
Target:  5'- uACGCGc---GCGCCGuCGCGCCGcCGUc -3'
miRNA:   3'- -UGCGCaacuUGUGGC-GCGUGGU-GCAc -5'
23738 5' -55.4 NC_005261.1 + 99854 0.66 0.893378
Target:  5'- -aGCGgcaccGGcCGCCGCGCGCCGCc-- -3'
miRNA:   3'- ugCGCaa---CUuGUGGCGCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 136607 0.66 0.918256
Target:  5'- -aGCGUgGAGCGgCGCGCGCgCGCc-- -3'
miRNA:   3'- ugCGCAaCUUGUgGCGCGUG-GUGcac -5'
23738 5' -55.4 NC_005261.1 + 93504 0.66 0.906294
Target:  5'- cGCGCGaaccgcGGCGCCGUGUugGCCGCGa- -3'
miRNA:   3'- -UGCGCaac---UUGUGGCGCG--UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 101020 0.66 0.906294
Target:  5'- aGCGCGccugUGAACGCgGCcgGCAgCCGCGc- -3'
miRNA:   3'- -UGCGCa---ACUUGUGgCG--CGU-GGUGCac -5'
23738 5' -55.4 NC_005261.1 + 100987 0.66 0.911796
Target:  5'- aGCGCGU----CGCCGCGCuccgccaGCCGCGc- -3'
miRNA:   3'- -UGCGCAacuuGUGGCGCG-------UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 39540 0.66 0.912395
Target:  5'- uACGCGgccgccAGCcCCGCGCGCgCGCGg- -3'
miRNA:   3'- -UGCGCaac---UUGuGGCGCGUG-GUGCac -5'
23738 5' -55.4 NC_005261.1 + 3552 0.66 0.908763
Target:  5'- aGCGCGgcGGGCGCggcgccgcuaaggcgCGCGCgcuccACCGCGUc -3'
miRNA:   3'- -UGCGCaaCUUGUG---------------GCGCG-----UGGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 82362 0.66 0.906294
Target:  5'- -gGCGUcgGcGCGCgCGCGCGCCGCc-- -3'
miRNA:   3'- ugCGCAa-CuUGUG-GCGCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 58214 0.66 0.906294
Target:  5'- cGCGCGcc-AGCAgCGCGC-CCGCGg- -3'
miRNA:   3'- -UGCGCaacUUGUgGCGCGuGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 124261 0.66 0.918256
Target:  5'- cGCGCGgcGccGC-CCGCGCGCCcCGg- -3'
miRNA:   3'- -UGCGCaaCu-UGuGGCGCGUGGuGCac -5'
23738 5' -55.4 NC_005261.1 + 101879 0.67 0.853968
Target:  5'- cGCGCGcaGGGCGCCcagccgcGCGCgcuccuccucgaaaGCCGCGUGc -3'
miRNA:   3'- -UGCGCaaCUUGUGG-------CGCG--------------UGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 2226 0.67 0.857103
Target:  5'- gUGCGa-GAGCccGCCGCGCACCGgCGg- -3'
miRNA:   3'- uGCGCaaCUUG--UGGCGCGUGGU-GCac -5'
23738 5' -55.4 NC_005261.1 + 29924 0.67 0.857103
Target:  5'- uGCGCGagcuggcGGACGCUGCGCugcggccuGCCGCGa- -3'
miRNA:   3'- -UGCGCaa-----CUUGUGGCGCG--------UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 58258 0.67 0.879534
Target:  5'- cCGCGcc--GCGCCGCGCucGCCGCGc- -3'
miRNA:   3'- uGCGCaacuUGUGGCGCG--UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 101227 0.67 0.885877
Target:  5'- aGCGCGUcGAggugGCGCCucagcucGCGCAgCGCGUc -3'
miRNA:   3'- -UGCGCAaCU----UGUGG-------CGCGUgGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 53108 0.67 0.88657
Target:  5'- aGCGCcgc-GGCGCUGCGCGCCGCc-- -3'
miRNA:   3'- -UGCGcaacUUGUGGCGCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 105603 0.67 0.879534
Target:  5'- cGCGCGacGAACGCC-UGCGgCACGUc -3'
miRNA:   3'- -UGCGCaaCUUGUGGcGCGUgGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 57610 0.67 0.857103
Target:  5'- -gGCGgcGcACGCCGCGCAgcccuCCGgGUGg -3'
miRNA:   3'- ugCGCaaCuUGUGGCGCGU-----GGUgCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.