Results 81 - 100 of 266 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23738 | 5' | -55.4 | NC_005261.1 | + | 89948 | 0.67 | 0.879534 |
Target: 5'- gGCGCGgcuggccgGGAUcacaguGCCGCGCGCCAUc-- -3' miRNA: 3'- -UGCGCaa------CUUG------UGGCGCGUGGUGcac -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 127703 | 0.67 | 0.88657 |
Target: 5'- gGCGcCGgagGAGCugCGCGUggccuGCCugGUa -3' miRNA: 3'- -UGC-GCaa-CUUGugGCGCG-----UGGugCAc -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 112014 | 0.67 | 0.88657 |
Target: 5'- uCGUGcgGAuCGCCGCaacagcCGCCACGUGg -3' miRNA: 3'- uGCGCaaCUuGUGGCGc-----GUGGUGCAC- -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 129038 | 0.67 | 0.879534 |
Target: 5'- uACGCGgcaGACgcccacgcuGCCGCGCcCUACGUGu -3' miRNA: 3'- -UGCGCaacUUG---------UGGCGCGuGGUGCAC- -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 13642 | 0.67 | 0.879534 |
Target: 5'- cACGCGgaagcgcGCGCCGUGCcgccGCCGCGg- -3' miRNA: 3'- -UGCGCaacu---UGUGGCGCG----UGGUGCac -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 76216 | 0.67 | 0.879534 |
Target: 5'- cCGCGccu-GCGCCGCGCGCUugACGa- -3' miRNA: 3'- uGCGCaacuUGUGGCGCGUGG--UGCac -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 65669 | 0.67 | 0.872273 |
Target: 5'- gGCGCGc--AGCGCCGCcaGCACCGgGUc -3' miRNA: 3'- -UGCGCaacUUGUGGCG--CGUGGUgCAc -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 64616 | 0.67 | 0.872273 |
Target: 5'- cGCGCGc-GAAgGCCG-GCACCACa-- -3' miRNA: 3'- -UGCGCaaCUUgUGGCgCGUGGUGcac -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 2226 | 0.67 | 0.857103 |
Target: 5'- gUGCGa-GAGCccGCCGCGCACCGgCGg- -3' miRNA: 3'- uGCGCaaCUUG--UGGCGCGUGGU-GCac -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 101879 | 0.67 | 0.853968 |
Target: 5'- cGCGCGcaGGGCGCCcagccgcGCGCgcuccuccucgaaaGCCGCGUGc -3' miRNA: 3'- -UGCGCaaCUUGUGG-------CGCG--------------UGGUGCAC- -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 73808 | 0.67 | 0.872273 |
Target: 5'- gGCGCGcaGAA-GCCGCGC-CCGCGc- -3' miRNA: 3'- -UGCGCaaCUUgUGGCGCGuGGUGCac -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 124981 | 0.67 | 0.857103 |
Target: 5'- cGCGCGggGGAaacuGCUGCGCAUaCACGg- -3' miRNA: 3'- -UGCGCaaCUUg---UGGCGCGUG-GUGCac -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 118680 | 0.67 | 0.864794 |
Target: 5'- -gGCGgcGGGCGCUgGCGCACgCGCGg- -3' miRNA: 3'- ugCGCaaCUUGUGG-CGCGUG-GUGCac -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 37109 | 0.67 | 0.864794 |
Target: 5'- cGCGCGgcUGuACucuCUGCGCGCCGgcCGUGg -3' miRNA: 3'- -UGCGCa-ACuUGu--GGCGCGUGGU--GCAC- -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 47630 | 0.67 | 0.864794 |
Target: 5'- cCGCGgc---CGCCGCGCgcACCGCGUc -3' miRNA: 3'- uGCGCaacuuGUGGCGCG--UGGUGCAc -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 61114 | 0.67 | 0.864794 |
Target: 5'- cGCGCGcu--GCGCCGUGCGCUGCu-- -3' miRNA: 3'- -UGCGCaacuUGUGGCGCGUGGUGcac -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 13134 | 0.67 | 0.857103 |
Target: 5'- gGCGCGUgugGucgguGACGgCGCGCACCAgGc- -3' miRNA: 3'- -UGCGCAa--C-----UUGUgGCGCGUGGUgCac -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 126939 | 0.67 | 0.872273 |
Target: 5'- aGCGCGgccagGGGCGCCGgGCGCgGgGg- -3' miRNA: 3'- -UGCGCaa---CUUGUGGCgCGUGgUgCac -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 101227 | 0.67 | 0.885877 |
Target: 5'- aGCGCGUcGAggugGCGCCucagcucGCGCAgCGCGUc -3' miRNA: 3'- -UGCGCAaCU----UGUGG-------CGCGUgGUGCAc -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 99234 | 0.67 | 0.88657 |
Target: 5'- gGCGCGUcGGcgucGCGCC-CGCcggGCCGCGUa -3' miRNA: 3'- -UGCGCAaCU----UGUGGcGCG---UGGUGCAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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