miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 5' -55.4 NC_005261.1 + 106977 0.82 0.191294
Target:  5'- gGCGCGc---GCGCCGCGCACCGCGUc -3'
miRNA:   3'- -UGCGCaacuUGUGGCGCGUGGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 31974 0.81 0.222151
Target:  5'- cACGCGccUGGGC-CCGCGCACCGCGg- -3'
miRNA:   3'- -UGCGCa-ACUUGuGGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 76420 0.78 0.325287
Target:  5'- gGCGCGUgcaGAGCGCCG-GCGCCAUGg- -3'
miRNA:   3'- -UGCGCAa--CUUGUGGCgCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 64144 0.78 0.325287
Target:  5'- aGCGCGUccUGGcccaGC-CCGCGCAUCGCGUGc -3'
miRNA:   3'- -UGCGCA--ACU----UGuGGCGCGUGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 1321 0.77 0.340429
Target:  5'- cACGCGcuccgGGACGCCGcCGCGCCGCGc- -3'
miRNA:   3'- -UGCGCaa---CUUGUGGC-GCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 68167 0.76 0.380475
Target:  5'- cGCGCGcgGAGCuCgCGCGCGCCGCGg- -3'
miRNA:   3'- -UGCGCaaCUUGuG-GCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 47277 0.76 0.388853
Target:  5'- -gGCGaaGAGCGCCGCGUGCCACuGUGc -3'
miRNA:   3'- ugCGCaaCUUGUGGCGCGUGGUG-CAC- -5'
23738 5' -55.4 NC_005261.1 + 133033 0.76 0.405968
Target:  5'- gGCGCGc----CACCGCGCACgCACGUGc -3'
miRNA:   3'- -UGCGCaacuuGUGGCGCGUG-GUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 80077 0.75 0.42355
Target:  5'- gGCGUGggGGACGCggaccggcgCGCGCGCCGCGg- -3'
miRNA:   3'- -UGCGCaaCUUGUG---------GCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 71113 0.75 0.450756
Target:  5'- gGCGCGcagcUUGcGC-CCGCGCGCCACGa- -3'
miRNA:   3'- -UGCGC----AACuUGuGGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 3469 0.75 0.468474
Target:  5'- cGCGCGUcGAGUACCGCGCcagcgggGCCACGg- -3'
miRNA:   3'- -UGCGCAaCUUGUGGCGCG-------UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 53699 0.74 0.488464
Target:  5'- -aGCccccGGGCGCCGCGCGCCGCGg- -3'
miRNA:   3'- ugCGcaa-CUUGUGGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 108478 0.74 0.488464
Target:  5'- cCGCGUcgGcGCGCaCGCGCGCCGCGa- -3'
miRNA:   3'- uGCGCAa-CuUGUG-GCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 64814 0.74 0.498123
Target:  5'- cGCGCGcgcGcGCGCCGCGCGCCGgGUc -3'
miRNA:   3'- -UGCGCaa-CuUGUGGCGCGUGGUgCAc -5'
23738 5' -55.4 NC_005261.1 + 100897 0.74 0.517689
Target:  5'- uACGCGgccu-CGCCGCGCACCGCc-- -3'
miRNA:   3'- -UGCGCaacuuGUGGCGCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 98277 0.74 0.527588
Target:  5'- cGCGCGUUcGACGCCcgGCGCGuCCGCGg- -3'
miRNA:   3'- -UGCGCAAcUUGUGG--CGCGU-GGUGCac -5'
23738 5' -55.4 NC_005261.1 + 118850 0.74 0.527588
Target:  5'- gGCGCGgaGGGCGgCGCGC-CCGCGg- -3'
miRNA:   3'- -UGCGCaaCUUGUgGCGCGuGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 46670 0.73 0.547588
Target:  5'- cGCGCGUUG---GCCGCGCGcuCCACGg- -3'
miRNA:   3'- -UGCGCAACuugUGGCGCGU--GGUGCac -5'
23738 5' -55.4 NC_005261.1 + 118553 0.73 0.547588
Target:  5'- cGCGCGcgaGGACGCCGUGC-CCGCGc- -3'
miRNA:   3'- -UGCGCaa-CUUGUGGCGCGuGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 44022 0.73 0.578009
Target:  5'- gGCGCGgcGGGCggccGCCGCGCggcgGCCGCGg- -3'
miRNA:   3'- -UGCGCaaCUUG----UGGCGCG----UGGUGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.