miRNA display CGI


Results 21 - 40 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 5' -55.4 NC_005261.1 + 110680 0.73 0.578009
Target:  5'- aGCGCcugGAGCAcgagggcuuCCGCGC-CCACGUGg -3'
miRNA:   3'- -UGCGcaaCUUGU---------GGCGCGuGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 44022 0.73 0.578009
Target:  5'- gGCGCGgcGGGCggccGCCGCGCggcgGCCGCGg- -3'
miRNA:   3'- -UGCGCaaCUUG----UGGCGCG----UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 49300 0.73 0.578009
Target:  5'- cCGCGgcggUGAGCGCCGCGCAgcCCuCGa- -3'
miRNA:   3'- uGCGCa---ACUUGUGGCGCGU--GGuGCac -5'
23738 5' -55.4 NC_005261.1 + 4929 0.72 0.588237
Target:  5'- cCGCGgccgcGAGCGCC-CGCGCCGCGg- -3'
miRNA:   3'- uGCGCaa---CUUGUGGcGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 118578 0.72 0.588237
Target:  5'- cGCGCGgcGGcgcGCGCCGC-CGCCGCGg- -3'
miRNA:   3'- -UGCGCaaCU---UGUGGCGcGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 17646 0.72 0.598497
Target:  5'- uCGCGaggccgaUGAGgAUgGCGCGCCGCGUGg -3'
miRNA:   3'- uGCGCa------ACUUgUGgCGCGUGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 102299 0.72 0.606723
Target:  5'- cCGCGggucguaGCCGCGCGCCGCGg- -3'
miRNA:   3'- uGCGCaacuug-UGGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 60706 0.72 0.608782
Target:  5'- cGCGCGUggcgGcGCACgGCGgugcCACCGCGUGc -3'
miRNA:   3'- -UGCGCAa---CuUGUGgCGC----GUGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 130135 0.72 0.608782
Target:  5'- cGCGCGccGucCGCCgaGCGCACCACGUc -3'
miRNA:   3'- -UGCGCaaCuuGUGG--CGCGUGGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 132964 0.72 0.609812
Target:  5'- gACGUGgccgccuucguCGCCGCGCACCGCGa- -3'
miRNA:   3'- -UGCGCaacuu------GUGGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 43086 0.72 0.619085
Target:  5'- aACGCua--AACGCCGCGCGCUACGa- -3'
miRNA:   3'- -UGCGcaacUUGUGGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 126016 0.72 0.619085
Target:  5'- cCGUaGUUGAucGCGCCGCGCgGCCGCGc- -3'
miRNA:   3'- uGCG-CAACU--UGUGGCGCG-UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 109222 0.72 0.619085
Target:  5'- gGCGCGgc--ACGCCGCGCGCUGCa-- -3'
miRNA:   3'- -UGCGCaacuUGUGGCGCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 73530 0.72 0.619085
Target:  5'- cCGUGggGAACAUCGUGCGCCA-GUa -3'
miRNA:   3'- uGCGCaaCUUGUGGCGCGUGGUgCAc -5'
23738 5' -55.4 NC_005261.1 + 64015 0.72 0.626304
Target:  5'- aGCGCGUaggUGAgcguguucucgucgGCGCgGCucuGCGCCGCGUGg -3'
miRNA:   3'- -UGCGCA---ACU--------------UGUGgCG---CGUGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 107630 0.72 0.629398
Target:  5'- uGCGCGggaacucGAGCGcCCGCGCugCGCGc- -3'
miRNA:   3'- -UGCGCaa-----CUUGU-GGCGCGugGUGCac -5'
23738 5' -55.4 NC_005261.1 + 14227 0.72 0.629398
Target:  5'- cGCGCGgUGAAgACCGCGCcgGCCGgGg- -3'
miRNA:   3'- -UGCGCaACUUgUGGCGCG--UGGUgCac -5'
23738 5' -55.4 NC_005261.1 + 127346 0.72 0.639713
Target:  5'- -aGCGgcgGGGCGCUGgGC-CCGCGUGg -3'
miRNA:   3'- ugCGCaa-CUUGUGGCgCGuGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 72481 0.71 0.647961
Target:  5'- aGCGCGgccagcgccagGAGCGCCGCGCGaaGCGg- -3'
miRNA:   3'- -UGCGCaa---------CUUGUGGCGCGUggUGCac -5'
23738 5' -55.4 NC_005261.1 + 110930 0.71 0.650022
Target:  5'- cCGCGcUGGGCACCGaGCGCCGCc-- -3'
miRNA:   3'- uGCGCaACUUGUGGCgCGUGGUGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.