miRNA display CGI


Results 41 - 60 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 5' -55.4 NC_005261.1 + 110930 0.71 0.650022
Target:  5'- cCGCGcUGGGCACCGaGCGCCGCc-- -3'
miRNA:   3'- uGCGCaACUUGUGGCgCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 75281 0.71 0.650022
Target:  5'- uGCGCGgugcugUGccuGCACCucGCGCACCGCGc- -3'
miRNA:   3'- -UGCGCa-----ACu--UGUGG--CGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 1922 0.71 0.660317
Target:  5'- cGCGCGgcGcacuGCGCCGCgggcaGCACCGCGg- -3'
miRNA:   3'- -UGCGCaaCu---UGUGGCG-----CGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 91437 0.71 0.660317
Target:  5'- cCGCGgUGAacGCGCUGCGCGgCACGg- -3'
miRNA:   3'- uGCGCaACU--UGUGGCGCGUgGUGCac -5'
23738 5' -55.4 NC_005261.1 + 92564 0.71 0.670589
Target:  5'- cGCGCGccccGcGCGCCGCGCGCCcACGc- -3'
miRNA:   3'- -UGCGCaa--CuUGUGGCGCGUGG-UGCac -5'
23738 5' -55.4 NC_005261.1 + 30138 0.71 0.670589
Target:  5'- gACGCGgugGAGCGCgCGCGCcuuagcggcGCCGCGc- -3'
miRNA:   3'- -UGCGCaa-CUUGUG-GCGCG---------UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 98197 0.71 0.670589
Target:  5'- gGCGCGgcGGGCAgCGgGCGCCGCc-- -3'
miRNA:   3'- -UGCGCaaCUUGUgGCgCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 81815 0.71 0.670589
Target:  5'- uGCGCGgcggUG-ACGCCcCGCGCCGCGc- -3'
miRNA:   3'- -UGCGCa---ACuUGUGGcGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 85157 0.71 0.670589
Target:  5'- gACGUaGUUGAugGCCGCGUA-CGCGUc -3'
miRNA:   3'- -UGCG-CAACUugUGGCGCGUgGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 104020 0.71 0.680829
Target:  5'- cGCGCGcUG--UACUGCGCGCCGCGc- -3'
miRNA:   3'- -UGCGCaACuuGUGGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 58796 0.71 0.680829
Target:  5'- cGCGCGcagGAAgGCCGgcacgcgcCGCGCCACGUc -3'
miRNA:   3'- -UGCGCaa-CUUgUGGC--------GCGUGGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 54258 0.71 0.691028
Target:  5'- aGCGCGcccuGGCGCCGCGCACaCugGa- -3'
miRNA:   3'- -UGCGCaac-UUGUGGCGCGUG-GugCac -5'
23738 5' -55.4 NC_005261.1 + 13418 0.71 0.691028
Target:  5'- gACGCGaagGcGCACCGCGCgucgACCGgGUGc -3'
miRNA:   3'- -UGCGCaa-CuUGUGGCGCG----UGGUgCAC- -5'
23738 5' -55.4 NC_005261.1 + 83744 0.71 0.691028
Target:  5'- -gGCGUcgaGGugGCgGCGCGCCACGg- -3'
miRNA:   3'- ugCGCAa--CUugUGgCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 39594 0.71 0.691028
Target:  5'- -aGCGccGAGCGCCGCGCGCCccCGc- -3'
miRNA:   3'- ugCGCaaCUUGUGGCGCGUGGu-GCac -5'
23738 5' -55.4 NC_005261.1 + 30355 0.7 0.701177
Target:  5'- uCGCGgcccUGAaggccggcGCGCCGgGCGCCGCGg- -3'
miRNA:   3'- uGCGCa---ACU--------UGUGGCgCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 103280 0.7 0.701177
Target:  5'- aGCGCGccGggUGCCGCGCGcagccCCGCGa- -3'
miRNA:   3'- -UGCGCaaCuuGUGGCGCGU-----GGUGCac -5'
23738 5' -55.4 NC_005261.1 + 43800 0.7 0.701177
Target:  5'- cGCGgGUgaggGGGCGCCggGCGCGCCcucCGUGg -3'
miRNA:   3'- -UGCgCAa---CUUGUGG--CGCGUGGu--GCAC- -5'
23738 5' -55.4 NC_005261.1 + 129569 0.7 0.710262
Target:  5'- -gGCGUaGAggaggagGCgGCCGCGCGCCGCGg- -3'
miRNA:   3'- ugCGCAaCU-------UG-UGGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 34357 0.7 0.711268
Target:  5'- gACGgGgccGGGCGCCGCGCggcGCCGCGc- -3'
miRNA:   3'- -UGCgCaa-CUUGUGGCGCG---UGGUGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.