miRNA display CGI


Results 61 - 80 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 5' -55.4 NC_005261.1 + 83671 0.7 0.711268
Target:  5'- cGCGCGccUGGGCGCgcaGCGCGCCGCc-- -3'
miRNA:   3'- -UGCGCa-ACUUGUGg--CGCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 54072 0.7 0.711268
Target:  5'- gUGCGgucGAAgGCCGCGCggaccGCCACGUu -3'
miRNA:   3'- uGCGCaa-CUUgUGGCGCG-----UGGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 47955 0.7 0.711268
Target:  5'- aGCGCGUUc-ACGCUGCGCGCgagCACGUc -3'
miRNA:   3'- -UGCGCAAcuUGUGGCGCGUG---GUGCAc -5'
23738 5' -55.4 NC_005261.1 + 44861 0.7 0.711268
Target:  5'- cCGCGaggaaGAGCGCCGCcgcgaGCGCCGCGg- -3'
miRNA:   3'- uGCGCaa---CUUGUGGCG-----CGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 34357 0.7 0.711268
Target:  5'- gACGgGgccGGGCGCCGCGCggcGCCGCGc- -3'
miRNA:   3'- -UGCgCaa-CUUGUGGCGCG---UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 1380 0.7 0.711268
Target:  5'- cCGCGUcccaGGccACGCCGgGCGCCGCGg- -3'
miRNA:   3'- uGCGCAa---CU--UGUGGCgCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 80218 0.7 0.712273
Target:  5'- aGCGCGUUGcugagcaucggccgGAaggccacgacgaagcCGCCGCGCGCCAgGUa -3'
miRNA:   3'- -UGCGCAAC--------------UU---------------GUGGCGCGUGGUgCAc -5'
23738 5' -55.4 NC_005261.1 + 37225 0.7 0.72129
Target:  5'- cCGCGggcuuGCGCgGCGCGgCGCGUGg -3'
miRNA:   3'- uGCGCaacu-UGUGgCGCGUgGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 118260 0.7 0.731234
Target:  5'- gGCGUGccggUGcACugCGCGCACUuCGUGa -3'
miRNA:   3'- -UGCGCa---ACuUGugGCGCGUGGuGCAC- -5'
23738 5' -55.4 NC_005261.1 + 70943 0.7 0.731234
Target:  5'- uGCGCGUccgccggGAACGCCGa-CGCCGCGa- -3'
miRNA:   3'- -UGCGCAa------CUUGUGGCgcGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 46811 0.7 0.731234
Target:  5'- cGCGCGcgGAugGCgCGCGCcagGCgCGCGUGc -3'
miRNA:   3'- -UGCGCaaCUugUG-GCGCG---UG-GUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 43018 0.7 0.731234
Target:  5'- gGCGUGUacAGCGCCGUGCGCUGCa-- -3'
miRNA:   3'- -UGCGCAacUUGUGGCGCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 133819 0.7 0.731234
Target:  5'- -gGCGacGAgGCGCUGCGCGgCCGCGUGc -3'
miRNA:   3'- ugCGCaaCU-UGUGGCGCGU-GGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 31057 0.7 0.741091
Target:  5'- aGCGCGgcggGAGcCGCCGCuGCccgcCCGCGUGc -3'
miRNA:   3'- -UGCGCaa--CUU-GUGGCG-CGu---GGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 100722 0.7 0.741091
Target:  5'- cCGCGgcc-GCGCCGCGCGCgCGCGc- -3'
miRNA:   3'- uGCGCaacuUGUGGCGCGUG-GUGCac -5'
23738 5' -55.4 NC_005261.1 + 120942 0.7 0.750852
Target:  5'- gGCGCGggaaggUGGAgGCuCGCGCcCCGCGg- -3'
miRNA:   3'- -UGCGCa-----ACUUgUG-GCGCGuGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 102821 0.7 0.750852
Target:  5'- cGCGCGccGGucuGCGCCucgcgcCGCGCCACGUGc -3'
miRNA:   3'- -UGCGCaaCU---UGUGGc-----GCGUGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 102670 0.7 0.750852
Target:  5'- cCGCGgcGcccAGCGCCGCGUccGCCGCGg- -3'
miRNA:   3'- uGCGCaaC---UUGUGGCGCG--UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 76027 0.7 0.750852
Target:  5'- aGCGCcgcGGGCGCCccGCGCGCCaucaGCGUGg -3'
miRNA:   3'- -UGCGcaaCUUGUGG--CGCGUGG----UGCAC- -5'
23738 5' -55.4 NC_005261.1 + 10376 0.69 0.760506
Target:  5'- cGCGCGcgcuGCGCCGCGCGCU-CGUc -3'
miRNA:   3'- -UGCGCaacuUGUGGCGCGUGGuGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.