miRNA display CGI


Results 81 - 100 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 5' -55.4 NC_005261.1 + 106681 0.69 0.760506
Target:  5'- cGCGCGcccGAGgGCCGCGCcgAUCGCGUc -3'
miRNA:   3'- -UGCGCaa-CUUgUGGCGCG--UGGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 108751 0.69 0.760506
Target:  5'- cCGCGgcGucCGCgGCGCGCCGCGc- -3'
miRNA:   3'- uGCGCaaCuuGUGgCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 53982 0.69 0.760506
Target:  5'- aGCGCGgcGAGCuCCaGCGCGCgGCGc- -3'
miRNA:   3'- -UGCGCaaCUUGuGG-CGCGUGgUGCac -5'
23738 5' -55.4 NC_005261.1 + 10376 0.69 0.760506
Target:  5'- cGCGCGcgcuGCGCCGCGCGCU-CGUc -3'
miRNA:   3'- -UGCGCaacuUGUGGCGCGUGGuGCAc -5'
23738 5' -55.4 NC_005261.1 + 3900 0.69 0.760506
Target:  5'- aGCGCGgcgcGGGCGCC-CGCGCCGCc-- -3'
miRNA:   3'- -UGCGCaa--CUUGUGGcGCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 89114 0.69 0.770045
Target:  5'- cGCGCGUgGcACugCGCGCGCCGg--- -3'
miRNA:   3'- -UGCGCAaCuUGugGCGCGUGGUgcac -5'
23738 5' -55.4 NC_005261.1 + 75587 0.69 0.770045
Target:  5'- gGCGCGgcGcuCG-CGCGCGCCGCGg- -3'
miRNA:   3'- -UGCGCaaCuuGUgGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 73025 0.69 0.770045
Target:  5'- aGCGCGUccca-GCCGuCGCGCCACGc- -3'
miRNA:   3'- -UGCGCAacuugUGGC-GCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 128410 0.69 0.770045
Target:  5'- uCGCGUccagcaagGggUcaagGCCGCGCACCAUGg- -3'
miRNA:   3'- uGCGCAa-------CuuG----UGGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 45961 0.69 0.770045
Target:  5'- gGCGcCGUUGAGCA-UGCGCGCCAg--- -3'
miRNA:   3'- -UGC-GCAACUUGUgGCGCGUGGUgcac -5'
23738 5' -55.4 NC_005261.1 + 84836 0.69 0.770045
Target:  5'- gAUGC--UGAGgcccagcacCACCGCGgGCCGCGUGg -3'
miRNA:   3'- -UGCGcaACUU---------GUGGCGCgUGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 81282 0.69 0.770045
Target:  5'- uGCGCGagccgGAGCGCgGCGCG-CACGUc -3'
miRNA:   3'- -UGCGCaa---CUUGUGgCGCGUgGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 29479 0.69 0.770045
Target:  5'- uACGCGgcgcuggUGGACcugguguaCGCGCGCCGCGa- -3'
miRNA:   3'- -UGCGCa------ACUUGug------GCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 59070 0.69 0.779459
Target:  5'- cCGCGgaGAGCGCgCGCggguGCGCCGCGc- -3'
miRNA:   3'- uGCGCaaCUUGUG-GCG----CGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 49432 0.69 0.779459
Target:  5'- aGCGCGgaaacagcgcGAGCcCgCGCGCGCCGCGg- -3'
miRNA:   3'- -UGCGCaa--------CUUGuG-GCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 38523 0.69 0.779459
Target:  5'- cGCGCGcUG-GCugCGCGCGCCGgGc- -3'
miRNA:   3'- -UGCGCaACuUGugGCGCGUGGUgCac -5'
23738 5' -55.4 NC_005261.1 + 41386 0.69 0.780393
Target:  5'- -gGCuGUUGAGCACguaaguuacguccgaGCGCGCCACGa- -3'
miRNA:   3'- ugCG-CAACUUGUGg--------------CGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 42494 0.69 0.788739
Target:  5'- uGCGCGgc-GACGCgCGuCGCGCC-CGUGa -3'
miRNA:   3'- -UGCGCaacUUGUG-GC-GCGUGGuGCAC- -5'
23738 5' -55.4 NC_005261.1 + 47922 0.69 0.788739
Target:  5'- cGCGCGgccgucACGucCCGCGCGCCGCGc- -3'
miRNA:   3'- -UGCGCaacu--UGU--GGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 100683 0.69 0.788739
Target:  5'- cGCGCGagu-GCACCGCG-GCCGCGg- -3'
miRNA:   3'- -UGCGCaacuUGUGGCGCgUGGUGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.