miRNA display CGI


Results 21 - 40 of 266 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 5' -55.4 NC_005261.1 + 124508 0.66 0.918256
Target:  5'- cCGgGUc---CACCGUGCuCCACGUGg -3'
miRNA:   3'- uGCgCAacuuGUGGCGCGuGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 90204 0.66 0.918256
Target:  5'- aGCGCGggggcggcgGAGCGCCcuCGCGCgGCGg- -3'
miRNA:   3'- -UGCGCaa-------CUUGUGGc-GCGUGgUGCac -5'
23738 5' -55.4 NC_005261.1 + 69465 0.66 0.912395
Target:  5'- gGCGCGUcGAgggccACAuCCGCGCGaugCugGUGc -3'
miRNA:   3'- -UGCGCAaCU-----UGU-GGCGCGUg--GugCAC- -5'
23738 5' -55.4 NC_005261.1 + 1847 0.66 0.912395
Target:  5'- cGCGCGaa-GGCGCCGggcccgaagaCGCGCCGCGa- -3'
miRNA:   3'- -UGCGCaacUUGUGGC----------GCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 34213 0.66 0.912395
Target:  5'- gGCGCGUcGGACGCgGaCGCAgaCGCGg- -3'
miRNA:   3'- -UGCGCAaCUUGUGgC-GCGUg-GUGCac -5'
23738 5' -55.4 NC_005261.1 + 21645 0.66 0.912395
Target:  5'- gGCGCG---GACGCCGCugccGCACCGCc-- -3'
miRNA:   3'- -UGCGCaacUUGUGGCG----CGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 130787 0.66 0.912395
Target:  5'- cCGCGcUGGccGCACCGCGgACgACGc- -3'
miRNA:   3'- uGCGCaACU--UGUGGCGCgUGgUGCac -5'
23738 5' -55.4 NC_005261.1 + 49822 0.66 0.912395
Target:  5'- gGCGCGUgGAguuaaGCACCa-GCACCgaggGCGUGa -3'
miRNA:   3'- -UGCGCAaCU-----UGUGGcgCGUGG----UGCAC- -5'
23738 5' -55.4 NC_005261.1 + 31810 0.66 0.912395
Target:  5'- cGCGCGcuggccUGAGCGgCGCGCGCUggcGCGc- -3'
miRNA:   3'- -UGCGCa-----ACUUGUgGCGCGUGG---UGCac -5'
23738 5' -55.4 NC_005261.1 + 97846 0.66 0.912395
Target:  5'- -gGCGgcGGGCGCCGCcgcgGCAgCGCGg- -3'
miRNA:   3'- ugCGCaaCUUGUGGCG----CGUgGUGCac -5'
23738 5' -55.4 NC_005261.1 + 30267 0.66 0.912395
Target:  5'- gGCGCGgc-GGC-CCGCGCGCC-CGc- -3'
miRNA:   3'- -UGCGCaacUUGuGGCGCGUGGuGCac -5'
23738 5' -55.4 NC_005261.1 + 39540 0.66 0.912395
Target:  5'- uACGCGgccgccAGCcCCGCGCGCgCGCGg- -3'
miRNA:   3'- -UGCGCaac---UUGuGGCGCGUG-GUGCac -5'
23738 5' -55.4 NC_005261.1 + 95766 0.66 0.912395
Target:  5'- gGCGCcggGAGCcUCGCGCGCUGCGc- -3'
miRNA:   3'- -UGCGcaaCUUGuGGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 100987 0.66 0.911796
Target:  5'- aGCGCGU----CGCCGCGCuccgccaGCCGCGc- -3'
miRNA:   3'- -UGCGCAacuuGUGGCGCG-------UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 85635 0.66 0.911796
Target:  5'- cCGcCGUUGAgcagguccaugaaGCGCCGcCGCAgCACGg- -3'
miRNA:   3'- uGC-GCAACU-------------UGUGGC-GCGUgGUGCac -5'
23738 5' -55.4 NC_005261.1 + 102325 0.66 0.911796
Target:  5'- cCGCGgcGcGCAgCCGCGCcagcucgGCCGCGUc -3'
miRNA:   3'- uGCGCaaCuUGU-GGCGCG-------UGGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 3552 0.66 0.908763
Target:  5'- aGCGCGgcGGGCGCggcgccgcuaaggcgCGCGCgcuccACCGCGUc -3'
miRNA:   3'- -UGCGCaaCUUGUG---------------GCGCG-----UGGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 20822 0.66 0.906294
Target:  5'- uACGCGcagcUGAACugCGCGUucgcggggGCaGCGUGg -3'
miRNA:   3'- -UGCGCa---ACUUGugGCGCG--------UGgUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 40394 0.66 0.906294
Target:  5'- -aGCGggagGAcACGCUGCGCgacaggGCCACGUa -3'
miRNA:   3'- ugCGCaa--CU-UGUGGCGCG------UGGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 28272 0.66 0.906294
Target:  5'- gGCGCuGUUGccgcCGCCGCG-GCCGCGg- -3'
miRNA:   3'- -UGCG-CAACuu--GUGGCGCgUGGUGCac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.