Results 41 - 60 of 266 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23738 | 5' | -55.4 | NC_005261.1 | + | 94736 | 0.66 | 0.906294 |
Target: 5'- -gGCGg-GGACACCGaCGC-CgACGUGg -3' miRNA: 3'- ugCGCaaCUUGUGGC-GCGuGgUGCAC- -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 82362 | 0.66 | 0.906294 |
Target: 5'- -gGCGUcgGcGCGCgCGCGCGCCGCc-- -3' miRNA: 3'- ugCGCAa-CuUGUG-GCGCGUGGUGcac -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 43145 | 0.66 | 0.906294 |
Target: 5'- cGCGCGgccUGcGCGCCGCcGaCAUCGCGg- -3' miRNA: 3'- -UGCGCa--ACuUGUGGCG-C-GUGGUGCac -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 130738 | 0.66 | 0.906294 |
Target: 5'- cCGCcgacaUGAuCGCCGCGCugCugGUa -3' miRNA: 3'- uGCGca---ACUuGUGGCGCGugGugCAc -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 101020 | 0.66 | 0.906294 |
Target: 5'- aGCGCGccugUGAACGCgGCcgGCAgCCGCGc- -3' miRNA: 3'- -UGCGCa---ACUUGUGgCG--CGU-GGUGCac -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 97119 | 0.66 | 0.906294 |
Target: 5'- cCGCGgccgGAgGCGCCGCG-GCCACGc- -3' miRNA: 3'- uGCGCaa--CU-UGUGGCGCgUGGUGCac -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 107020 | 0.66 | 0.906294 |
Target: 5'- cACGUGcccaagGAGCAggGCGCGCCACGc- -3' miRNA: 3'- -UGCGCaa----CUUGUggCGCGUGGUGCac -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 87022 | 0.66 | 0.906294 |
Target: 5'- uGCGCG----GCcCCGCGCGCCACc-- -3' miRNA: 3'- -UGCGCaacuUGuGGCGCGUGGUGcac -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 1719 | 0.66 | 0.906294 |
Target: 5'- cGCGCGgc-GGCACgG-GCACCGCGg- -3' miRNA: 3'- -UGCGCaacUUGUGgCgCGUGGUGCac -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 4824 | 0.66 | 0.906294 |
Target: 5'- cCGCGUUGGGCGCagGCggcggcguccGCGCCGCa-- -3' miRNA: 3'- uGCGCAACUUGUGg-CG----------CGUGGUGcac -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 28272 | 0.66 | 0.906294 |
Target: 5'- gGCGCuGUUGccgcCGCCGCG-GCCGCGg- -3' miRNA: 3'- -UGCG-CAACuu--GUGGCGCgUGGUGCac -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 93504 | 0.66 | 0.906294 |
Target: 5'- cGCGCGaaccgcGGCGCCGUGUugGCCGCGa- -3' miRNA: 3'- -UGCGCaac---UUGUGGCGCG--UGGUGCac -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 97197 | 0.66 | 0.906294 |
Target: 5'- cCGCGgccgGaAGCGCCGCG-GCCACGc- -3' miRNA: 3'- uGCGCaa--C-UUGUGGCGCgUGGUGCac -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 44587 | 0.66 | 0.904417 |
Target: 5'- uGCGCGUccGGCGCuucggcuuccugauCGCGCACCaggagGCGUGc -3' miRNA: 3'- -UGCGCAacUUGUG--------------GCGCGUGG-----UGCAC- -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 84975 | 0.66 | 0.899954 |
Target: 5'- gGCGCGUccgcGAuGCGCCgGCGCACC-CaGUGc -3' miRNA: 3'- -UGCGCAa---CU-UGUGG-CGCGUGGuG-CAC- -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 53144 | 0.66 | 0.899954 |
Target: 5'- uACGCGc---GCGCCGuCGCGCCGcCGUc -3' miRNA: 3'- -UGCGCaacuUGUGGC-GCGUGGU-GCAc -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 16188 | 0.66 | 0.899954 |
Target: 5'- -gGCGggGGugGgCGgGgGCCGCGUGa -3' miRNA: 3'- ugCGCaaCUugUgGCgCgUGGUGCAC- -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 30184 | 0.66 | 0.899954 |
Target: 5'- uGCGCGccGAGgcggcCGCCGCGCuggaggcgGCCGCGcUGg -3' miRNA: 3'- -UGCGCaaCUU-----GUGGCGCG--------UGGUGC-AC- -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 106411 | 0.66 | 0.899954 |
Target: 5'- cGCGCGgcgcUGcAGCggGCCGCGguCCACGc- -3' miRNA: 3'- -UGCGCa---AC-UUG--UGGCGCguGGUGCac -5' |
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23738 | 5' | -55.4 | NC_005261.1 | + | 88485 | 0.66 | 0.899954 |
Target: 5'- cCGCGccgGAgcGCGCCGCGCucgacCCGCGc- -3' miRNA: 3'- uGCGCaa-CU--UGUGGCGCGu----GGUGCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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