miRNA display CGI


Results 61 - 80 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 5' -55.4 NC_005261.1 + 30184 0.66 0.899954
Target:  5'- uGCGCGccGAGgcggcCGCCGCGCuggaggcgGCCGCGcUGg -3'
miRNA:   3'- -UGCGCaaCUU-----GUGGCGCG--------UGGUGC-AC- -5'
23738 5' -55.4 NC_005261.1 + 2449 0.66 0.899954
Target:  5'- aGCGCcucggggucgaaGgcGAGCGCCGgGCGCCAgGg- -3'
miRNA:   3'- -UGCG------------CaaCUUGUGGCgCGUGGUgCac -5'
23738 5' -55.4 NC_005261.1 + 115843 0.66 0.899954
Target:  5'- gGCGCGUUG-GC-CCGCGCGgcccCCGCc-- -3'
miRNA:   3'- -UGCGCAACuUGuGGCGCGU----GGUGcac -5'
23738 5' -55.4 NC_005261.1 + 68113 0.66 0.899954
Target:  5'- uCGgGcugGAGCugCGCGgGCCGCGg- -3'
miRNA:   3'- uGCgCaa-CUUGugGCGCgUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 11196 0.66 0.899307
Target:  5'- uCGCGUUGuuguuuuuaaauaAACGCCGCGUGgccccCCGCGg- -3'
miRNA:   3'- uGCGCAAC-------------UUGUGGCGCGU-----GGUGCac -5'
23738 5' -55.4 NC_005261.1 + 114600 0.66 0.896037
Target:  5'- cCGCGaggcuguggagaUUGAGCGCgaguuuauuuggucaCGCGCGCCGCGc- -3'
miRNA:   3'- uGCGC------------AACUUGUG---------------GCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 51479 0.66 0.893378
Target:  5'- -gGCGcUGAuCACCG-GCGCCGCGc- -3'
miRNA:   3'- ugCGCaACUuGUGGCgCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 130633 0.66 0.893378
Target:  5'- aGCGCGcgGGGCGCgCGUGCGCuCGCc-- -3'
miRNA:   3'- -UGCGCaaCUUGUG-GCGCGUG-GUGcac -5'
23738 5' -55.4 NC_005261.1 + 99854 0.66 0.893378
Target:  5'- -aGCGgcaccGGcCGCCGCGCGCCGCc-- -3'
miRNA:   3'- ugCGCaa---CUuGUGGCGCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 12551 0.66 0.893378
Target:  5'- uACGCGggGGccccGCGCCGgGCAaCGCGg- -3'
miRNA:   3'- -UGCGCaaCU----UGUGGCgCGUgGUGCac -5'
23738 5' -55.4 NC_005261.1 + 64950 0.66 0.893378
Target:  5'- gGCGCGUgcGGCACUGUGUAcucguCCACGa- -3'
miRNA:   3'- -UGCGCAacUUGUGGCGCGU-----GGUGCac -5'
23738 5' -55.4 NC_005261.1 + 135010 0.66 0.893378
Target:  5'- gGCGCGgcGGGC-CCGCacGCgGCCGCGg- -3'
miRNA:   3'- -UGCGCaaCUUGuGGCG--CG-UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 32511 0.67 0.889321
Target:  5'- -gGCGggGGguccGCGCCGCGCccggccccggccccgGCCGCGg- -3'
miRNA:   3'- ugCGCaaCU----UGUGGCGCG---------------UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 98104 0.67 0.889321
Target:  5'- gGCGCGgcGGgcggcgaggcuggggACGCCGCGgCACCGgCGg- -3'
miRNA:   3'- -UGCGCaaCU---------------UGUGGCGC-GUGGU-GCac -5'
23738 5' -55.4 NC_005261.1 + 133268 0.67 0.88657
Target:  5'- cGCGCGaguaccaGGGCGCCgGCGCccGCCuCGUGg -3'
miRNA:   3'- -UGCGCaa-----CUUGUGG-CGCG--UGGuGCAC- -5'
23738 5' -55.4 NC_005261.1 + 46996 0.67 0.88657
Target:  5'- aGCGC-----GCGCCGCGCcGCCGCGa- -3'
miRNA:   3'- -UGCGcaacuUGUGGCGCG-UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 102988 0.67 0.88657
Target:  5'- cGCGCGc--GACACggcggccgccaCGCGCuCCGCGUGg -3'
miRNA:   3'- -UGCGCaacUUGUG-----------GCGCGuGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 127703 0.67 0.88657
Target:  5'- gGCGcCGgagGAGCugCGCGUggccuGCCugGUa -3'
miRNA:   3'- -UGC-GCaa-CUUGugGCGCG-----UGGugCAc -5'
23738 5' -55.4 NC_005261.1 + 53108 0.67 0.88657
Target:  5'- aGCGCcgc-GGCGCUGCGCGCCGCc-- -3'
miRNA:   3'- -UGCGcaacUUGUGGCGCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 99234 0.67 0.88657
Target:  5'- gGCGCGUcGGcgucGCGCC-CGCcggGCCGCGUa -3'
miRNA:   3'- -UGCGCAaCU----UGUGGcGCG---UGGUGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.