miRNA display CGI


Results 81 - 100 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 5' -55.4 NC_005261.1 + 53108 0.67 0.88657
Target:  5'- aGCGCcgc-GGCGCUGCGCGCCGCc-- -3'
miRNA:   3'- -UGCGcaacUUGUGGCGCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 127703 0.67 0.88657
Target:  5'- gGCGcCGgagGAGCugCGCGUggccuGCCugGUa -3'
miRNA:   3'- -UGC-GCaa-CUUGugGCGCG-----UGGugCAc -5'
23738 5' -55.4 NC_005261.1 + 101227 0.67 0.885877
Target:  5'- aGCGCGUcGAggugGCGCCucagcucGCGCAgCGCGUc -3'
miRNA:   3'- -UGCGCAaCU----UGUGG-------CGCGUgGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 105603 0.67 0.879534
Target:  5'- cGCGCGacGAACGCC-UGCGgCACGUc -3'
miRNA:   3'- -UGCGCaaCUUGUGGcGCGUgGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 13642 0.67 0.879534
Target:  5'- cACGCGgaagcgcGCGCCGUGCcgccGCCGCGg- -3'
miRNA:   3'- -UGCGCaacu---UGUGGCGCG----UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 129038 0.67 0.879534
Target:  5'- uACGCGgcaGACgcccacgcuGCCGCGCcCUACGUGu -3'
miRNA:   3'- -UGCGCaacUUG---------UGGCGCGuGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 76216 0.67 0.879534
Target:  5'- cCGCGccu-GCGCCGCGCGCUugACGa- -3'
miRNA:   3'- uGCGCaacuUGUGGCGCGUGG--UGCac -5'
23738 5' -55.4 NC_005261.1 + 108395 0.67 0.879534
Target:  5'- cGCGCGcuccAGCAgCCGCGCcACCGCGc- -3'
miRNA:   3'- -UGCGCaac-UUGU-GGCGCG-UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 89948 0.67 0.879534
Target:  5'- gGCGCGgcuggccgGGAUcacaguGCCGCGCGCCAUc-- -3'
miRNA:   3'- -UGCGCaa------CUUG------UGGCGCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 58258 0.67 0.879534
Target:  5'- cCGCGcc--GCGCCGCGCucGCCGCGc- -3'
miRNA:   3'- uGCGCaacuUGUGGCGCG--UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 65669 0.67 0.872273
Target:  5'- gGCGCGc--AGCGCCGCcaGCACCGgGUc -3'
miRNA:   3'- -UGCGCaacUUGUGGCG--CGUGGUgCAc -5'
23738 5' -55.4 NC_005261.1 + 126939 0.67 0.872273
Target:  5'- aGCGCGgccagGGGCGCCGgGCGCgGgGg- -3'
miRNA:   3'- -UGCGCaa---CUUGUGGCgCGUGgUgCac -5'
23738 5' -55.4 NC_005261.1 + 82137 0.67 0.872273
Target:  5'- gGCGCgGUUGuccacCACCGUGC-CCGCGc- -3'
miRNA:   3'- -UGCG-CAACuu---GUGGCGCGuGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 64616 0.67 0.872273
Target:  5'- cGCGCGc-GAAgGCCG-GCACCACa-- -3'
miRNA:   3'- -UGCGCaaCUUgUGGCgCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 73808 0.67 0.872273
Target:  5'- gGCGCGcaGAA-GCCGCGC-CCGCGc- -3'
miRNA:   3'- -UGCGCaaCUUgUGGCGCGuGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 109010 0.67 0.872273
Target:  5'- uGCGCGUUcaccgggccGAACGCCGCcguggcgcGCAgCCGCGc- -3'
miRNA:   3'- -UGCGCAA---------CUUGUGGCG--------CGU-GGUGCac -5'
23738 5' -55.4 NC_005261.1 + 96457 0.67 0.864794
Target:  5'- gGCGgGguacaGAAgGCCGCGCuCCGCGg- -3'
miRNA:   3'- -UGCgCaa---CUUgUGGCGCGuGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 61114 0.67 0.864794
Target:  5'- cGCGCGcu--GCGCCGUGCGCUGCu-- -3'
miRNA:   3'- -UGCGCaacuUGUGGCGCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 37109 0.67 0.864794
Target:  5'- cGCGCGgcUGuACucuCUGCGCGCCGgcCGUGg -3'
miRNA:   3'- -UGCGCa-ACuUGu--GGCGCGUGGU--GCAC- -5'
23738 5' -55.4 NC_005261.1 + 118680 0.67 0.864794
Target:  5'- -gGCGgcGGGCGCUgGCGCACgCGCGg- -3'
miRNA:   3'- ugCGCaaCUUGUGG-CGCGUG-GUGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.