miRNA display CGI


Results 101 - 120 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 5' -55.4 NC_005261.1 + 96457 0.67 0.864794
Target:  5'- gGCGgGguacaGAAgGCCGCGCuCCGCGg- -3'
miRNA:   3'- -UGCgCaa---CUUgUGGCGCGuGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 47630 0.67 0.864794
Target:  5'- cCGCGgc---CGCCGCGCgcACCGCGUc -3'
miRNA:   3'- uGCGCaacuuGUGGCGCG--UGGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 99378 0.67 0.864035
Target:  5'- aGCGCGUUGAccgucuGCACCucgcugggcggcuGcCGCACgaGCGUGa -3'
miRNA:   3'- -UGCGCAACU------UGUGG-------------C-GCGUGg-UGCAC- -5'
23738 5' -55.4 NC_005261.1 + 2226 0.67 0.857103
Target:  5'- gUGCGa-GAGCccGCCGCGCACCGgCGg- -3'
miRNA:   3'- uGCGCaaCUUG--UGGCGCGUGGU-GCac -5'
23738 5' -55.4 NC_005261.1 + 57985 0.67 0.857103
Target:  5'- cGCGCGgcc-GCGCCGCcaaaaaGCGCCaggACGUGg -3'
miRNA:   3'- -UGCGCaacuUGUGGCG------CGUGG---UGCAC- -5'
23738 5' -55.4 NC_005261.1 + 29924 0.67 0.857103
Target:  5'- uGCGCGagcuggcGGACGCUGCGCugcggccuGCCGCGa- -3'
miRNA:   3'- -UGCGCaa-----CUUGUGGCGCG--------UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 57610 0.67 0.857103
Target:  5'- -gGCGgcGcACGCCGCGCAgcccuCCGgGUGg -3'
miRNA:   3'- ugCGCaaCuUGUGGCGCGU-----GGUgCAC- -5'
23738 5' -55.4 NC_005261.1 + 92295 0.67 0.857103
Target:  5'- uGCaCGUaggccaggaUGAGCGCCGCGCGguCCGCGc- -3'
miRNA:   3'- -UGcGCA---------ACUUGUGGCGCGU--GGUGCac -5'
23738 5' -55.4 NC_005261.1 + 54638 0.67 0.857103
Target:  5'- cCGCG-UGAugAgCGCGC-CCGCGg- -3'
miRNA:   3'- uGCGCaACUugUgGCGCGuGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 71922 0.67 0.857103
Target:  5'- cACGuCGUUGAcgucaaagGCuGCCGCGCGCCccacugGCGUc -3'
miRNA:   3'- -UGC-GCAACU--------UG-UGGCGCGUGG------UGCAc -5'
23738 5' -55.4 NC_005261.1 + 124981 0.67 0.857103
Target:  5'- cGCGCGggGGAaacuGCUGCGCAUaCACGg- -3'
miRNA:   3'- -UGCGCaaCUUg---UGGCGCGUG-GUGCac -5'
23738 5' -55.4 NC_005261.1 + 13134 0.67 0.857103
Target:  5'- gGCGCGUgugGucgguGACGgCGCGCACCAgGc- -3'
miRNA:   3'- -UGCGCAa--C-----UUGUgGCGCGUGGUgCac -5'
23738 5' -55.4 NC_005261.1 + 101879 0.67 0.853968
Target:  5'- cGCGCGcaGGGCGCCcagccgcGCGCgcuccuccucgaaaGCCGCGUGc -3'
miRNA:   3'- -UGCGCaaCUUGUGG-------CGCG--------------UGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 75373 0.68 0.849204
Target:  5'- -gGCGUaccUGGACGCCcuggcGCGCGCCAuCGa- -3'
miRNA:   3'- ugCGCA---ACUUGUGG-----CGCGUGGU-GCac -5'
23738 5' -55.4 NC_005261.1 + 28582 0.68 0.849204
Target:  5'- gGCGCGc-GAGCGCCgGCGgGCCGCc-- -3'
miRNA:   3'- -UGCGCaaCUUGUGG-CGCgUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 45631 0.68 0.849204
Target:  5'- gGCGCGgcGGGC-CCGCGCcggagcaguGCCcagcggGCGUGa -3'
miRNA:   3'- -UGCGCaaCUUGuGGCGCG---------UGG------UGCAC- -5'
23738 5' -55.4 NC_005261.1 + 50039 0.68 0.849204
Target:  5'- cGCGCGacggUGcAGCGCCGCcGCgagaagcccgcuGCCGCGUa -3'
miRNA:   3'- -UGCGCa---AC-UUGUGGCG-CG------------UGGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 58161 0.68 0.849204
Target:  5'- cACGCGc-GAGuCGCUGCGCACgAgGUGc -3'
miRNA:   3'- -UGCGCaaCUU-GUGGCGCGUGgUgCAC- -5'
23738 5' -55.4 NC_005261.1 + 121810 0.68 0.849204
Target:  5'- gGCGCGUggcUGGGCuCUGCGggcCGCCGCGg- -3'
miRNA:   3'- -UGCGCA---ACUUGuGGCGC---GUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 84646 0.68 0.849204
Target:  5'- aGCGUGUUGucccggcuGGCGCCGCccGCGCCcGCGg- -3'
miRNA:   3'- -UGCGCAAC--------UUGUGGCG--CGUGG-UGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.