miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 5' -55.4 NC_005261.1 + 1142 0.66 0.922215
Target:  5'- gACGCGgacgagGAgagcacuuccacgcGCGCCGgccCGCGCCGCGg- -3'
miRNA:   3'- -UGCGCaa----CU--------------UGUGGC---GCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 1321 0.77 0.340429
Target:  5'- cACGCGcuccgGGACGCCGcCGCGCCGCGc- -3'
miRNA:   3'- -UGCGCaa---CUUGUGGC-GCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 1380 0.7 0.711268
Target:  5'- cCGCGUcccaGGccACGCCGgGCGCCGCGg- -3'
miRNA:   3'- uGCGCAa---CU--UGUGGCgCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 1719 0.66 0.906294
Target:  5'- cGCGCGgc-GGCACgG-GCACCGCGg- -3'
miRNA:   3'- -UGCGCaacUUGUGgCgCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 1755 0.68 0.82348
Target:  5'- gGCGCG-UGGcCACCGUguagcgcacguugGCGCCGCGg- -3'
miRNA:   3'- -UGCGCaACUuGUGGCG-------------CGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 1847 0.66 0.912395
Target:  5'- cGCGCGaa-GGCGCCGggcccgaagaCGCGCCGCGa- -3'
miRNA:   3'- -UGCGCaacUUGUGGC----------GCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 1922 0.71 0.660317
Target:  5'- cGCGCGgcGcacuGCGCCGCgggcaGCACCGCGg- -3'
miRNA:   3'- -UGCGCaaCu---UGUGGCG-----CGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 2226 0.67 0.857103
Target:  5'- gUGCGa-GAGCccGCCGCGCACCGgCGg- -3'
miRNA:   3'- uGCGCaaCUUG--UGGCGCGUGGU-GCac -5'
23738 5' -55.4 NC_005261.1 + 2449 0.66 0.899954
Target:  5'- aGCGCcucggggucgaaGgcGAGCGCCGgGCGCCAgGg- -3'
miRNA:   3'- -UGCG------------CaaCUUGUGGCgCGUGGUgCac -5'
23738 5' -55.4 NC_005261.1 + 3469 0.75 0.468474
Target:  5'- cGCGCGUcGAGUACCGCGCcagcgggGCCACGg- -3'
miRNA:   3'- -UGCGCAaCUUGUGGCGCG-------UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 3552 0.66 0.908763
Target:  5'- aGCGCGgcGGGCGCggcgccgcuaaggcgCGCGCgcuccACCGCGUc -3'
miRNA:   3'- -UGCGCaaCUUGUG---------------GCGCG-----UGGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 3866 0.66 0.923875
Target:  5'- cGCGCGgccggcGAGCACgGCGCGCagcuCGg- -3'
miRNA:   3'- -UGCGCaa----CUUGUGgCGCGUGgu--GCac -5'
23738 5' -55.4 NC_005261.1 + 3900 0.69 0.760506
Target:  5'- aGCGCGgcgcGGGCGCC-CGCGCCGCc-- -3'
miRNA:   3'- -UGCGCaa--CUUGUGGcGCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 4824 0.66 0.906294
Target:  5'- cCGCGUUGGGCGCagGCggcggcguccGCGCCGCa-- -3'
miRNA:   3'- uGCGCAACUUGUGg-CG----------CGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 4929 0.72 0.588237
Target:  5'- cCGCGgccgcGAGCGCC-CGCGCCGCGg- -3'
miRNA:   3'- uGCGCaa---CUUGUGGcGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 10376 0.69 0.760506
Target:  5'- cGCGCGcgcuGCGCCGCGCGCU-CGUc -3'
miRNA:   3'- -UGCGCaacuUGUGGCGCGUGGuGCAc -5'
23738 5' -55.4 NC_005261.1 + 11196 0.66 0.899307
Target:  5'- uCGCGUUGuuguuuuuaaauaAACGCCGCGUGgccccCCGCGg- -3'
miRNA:   3'- uGCGCAAC-------------UUGUGGCGCGU-----GGUGCac -5'
23738 5' -55.4 NC_005261.1 + 12519 0.66 0.923875
Target:  5'- cCGCGcgGGGCcCCGCGCcGCCGCc-- -3'
miRNA:   3'- uGCGCaaCUUGuGGCGCG-UGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 12551 0.66 0.893378
Target:  5'- uACGCGggGGccccGCGCCGgGCAaCGCGg- -3'
miRNA:   3'- -UGCGCaaCU----UGUGGCgCGUgGUGCac -5'
23738 5' -55.4 NC_005261.1 + 13134 0.67 0.857103
Target:  5'- gGCGCGUgugGucgguGACGgCGCGCACCAgGc- -3'
miRNA:   3'- -UGCGCAa--C-----UUGUgGCGCGUGGUgCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.