miRNA display CGI


Results 21 - 40 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 5' -55.4 NC_005261.1 + 13418 0.71 0.691028
Target:  5'- gACGCGaagGcGCACCGCGCgucgACCGgGUGc -3'
miRNA:   3'- -UGCGCaa-CuUGUGGCGCG----UGGUgCAC- -5'
23738 5' -55.4 NC_005261.1 + 13642 0.67 0.879534
Target:  5'- cACGCGgaagcgcGCGCCGUGCcgccGCCGCGg- -3'
miRNA:   3'- -UGCGCaacu---UGUGGCGCG----UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 14227 0.72 0.629398
Target:  5'- cGCGCGgUGAAgACCGCGCcgGCCGgGg- -3'
miRNA:   3'- -UGCGCaACUUgUGGCGCG--UGGUgCac -5'
23738 5' -55.4 NC_005261.1 + 16188 0.66 0.899954
Target:  5'- -gGCGggGGugGgCGgGgGCCGCGUGa -3'
miRNA:   3'- ugCGCaaCUugUgGCgCgUGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 17646 0.72 0.598497
Target:  5'- uCGCGaggccgaUGAGgAUgGCGCGCCGCGUGg -3'
miRNA:   3'- uGCGCa------ACUUgUGgCGCGUGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 20822 0.66 0.906294
Target:  5'- uACGCGcagcUGAACugCGCGUucgcggggGCaGCGUGg -3'
miRNA:   3'- -UGCGCa---ACUUGugGCGCG--------UGgUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 21645 0.66 0.912395
Target:  5'- gGCGCG---GACGCCGCugccGCACCGCc-- -3'
miRNA:   3'- -UGCGCaacUUGUGGCG----CGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 23175 0.68 0.815684
Target:  5'- gGCGCGccggGGGCgACagcgaGCGCGCCGCGg- -3'
miRNA:   3'- -UGCGCaa--CUUG-UGg----CGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 23288 0.66 0.923875
Target:  5'- cACGCGUccgUGGGCACa--GCACC-CGUa -3'
miRNA:   3'- -UGCGCA---ACUUGUGgcgCGUGGuGCAc -5'
23738 5' -55.4 NC_005261.1 + 28272 0.66 0.906294
Target:  5'- gGCGCuGUUGccgcCGCCGCG-GCCGCGg- -3'
miRNA:   3'- -UGCG-CAACuu--GUGGCGCgUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 28582 0.68 0.849204
Target:  5'- gGCGCGc-GAGCGCCgGCGgGCCGCc-- -3'
miRNA:   3'- -UGCGCaaCUUGUGG-CGCgUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 29229 0.68 0.80686
Target:  5'- cCGCGcaGGcuACGCCGCgGCGCCGCGc- -3'
miRNA:   3'- uGCGCaaCU--UGUGGCG-CGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 29397 0.66 0.923875
Target:  5'- cCGCGa--GGCgGCCGCGCGCUACGc- -3'
miRNA:   3'- uGCGCaacUUG-UGGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 29479 0.69 0.770045
Target:  5'- uACGCGgcgcuggUGGACcugguguaCGCGCGCCGCGa- -3'
miRNA:   3'- -UGCGCa------ACUUGug------GCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 29677 0.68 0.815684
Target:  5'- aACGCGcugUGGGCGCUGC-CG-CACGUGg -3'
miRNA:   3'- -UGCGCa--ACUUGUGGCGcGUgGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 29815 0.68 0.80686
Target:  5'- gGCGCGg---GCGCC-CGCGCCGCGc- -3'
miRNA:   3'- -UGCGCaacuUGUGGcGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 29924 0.67 0.857103
Target:  5'- uGCGCGagcuggcGGACGCUGCGCugcggccuGCCGCGa- -3'
miRNA:   3'- -UGCGCaa-----CUUGUGGCGCG--------UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 30138 0.71 0.670589
Target:  5'- gACGCGgugGAGCGCgCGCGCcuuagcggcGCCGCGc- -3'
miRNA:   3'- -UGCGCaa-CUUGUG-GCGCG---------UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 30184 0.66 0.899954
Target:  5'- uGCGCGccGAGgcggcCGCCGCGCuggaggcgGCCGCGcUGg -3'
miRNA:   3'- -UGCGCaaCUU-----GUGGCGCG--------UGGUGC-AC- -5'
23738 5' -55.4 NC_005261.1 + 30267 0.66 0.912395
Target:  5'- gGCGCGgc-GGC-CCGCGCGCC-CGc- -3'
miRNA:   3'- -UGCGCaacUUGuGGCGCGUGGuGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.