miRNA display CGI


Results 41 - 60 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 5' -55.4 NC_005261.1 + 30355 0.7 0.701177
Target:  5'- uCGCGgcccUGAaggccggcGCGCCGgGCGCCGCGg- -3'
miRNA:   3'- uGCGCa---ACU--------UGUGGCgCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 31057 0.7 0.741091
Target:  5'- aGCGCGgcggGAGcCGCCGCuGCccgcCCGCGUGc -3'
miRNA:   3'- -UGCGCaa--CUU-GUGGCG-CGu---GGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 31762 0.68 0.841106
Target:  5'- gGCGCacgUGuAC-CUGCGCGCCGCGg- -3'
miRNA:   3'- -UGCGca-ACuUGuGGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 31810 0.66 0.912395
Target:  5'- cGCGCGcuggccUGAGCGgCGCGCGCUggcGCGc- -3'
miRNA:   3'- -UGCGCa-----ACUUGUgGCGCGUGG---UGCac -5'
23738 5' -55.4 NC_005261.1 + 31974 0.81 0.222151
Target:  5'- cACGCGccUGGGC-CCGCGCACCGCGg- -3'
miRNA:   3'- -UGCGCa-ACUUGuGGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 32511 0.67 0.889321
Target:  5'- -gGCGggGGguccGCGCCGCGCccggccccggccccgGCCGCGg- -3'
miRNA:   3'- ugCGCaaCU----UGUGGCGCG---------------UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 33779 0.69 0.788739
Target:  5'- cCGCGgcGAGCGCUGgGCcCCGCGc- -3'
miRNA:   3'- uGCGCaaCUUGUGGCgCGuGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 34213 0.66 0.912395
Target:  5'- gGCGCGUcGGACGCgGaCGCAgaCGCGg- -3'
miRNA:   3'- -UGCGCAaCUUGUGgC-GCGUg-GUGCac -5'
23738 5' -55.4 NC_005261.1 + 34357 0.7 0.711268
Target:  5'- gACGgGgccGGGCGCCGCGCggcGCCGCGc- -3'
miRNA:   3'- -UGCgCaa-CUUGUGGCGCG---UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 36785 0.66 0.920533
Target:  5'- gUGCGUUGcGCcgagacuuugcgccgGCCG-GCGCUACGUGc -3'
miRNA:   3'- uGCGCAACuUG---------------UGGCgCGUGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 37109 0.67 0.864794
Target:  5'- cGCGCGgcUGuACucuCUGCGCGCCGgcCGUGg -3'
miRNA:   3'- -UGCGCa-ACuUGu--GGCGCGUGGU--GCAC- -5'
23738 5' -55.4 NC_005261.1 + 37225 0.7 0.72129
Target:  5'- cCGCGggcuuGCGCgGCGCGgCGCGUGg -3'
miRNA:   3'- uGCGCaacu-UGUGgCGCGUgGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 38523 0.69 0.779459
Target:  5'- cGCGCGcUG-GCugCGCGCGCCGgGc- -3'
miRNA:   3'- -UGCGCaACuUGugGCGCGUGGUgCac -5'
23738 5' -55.4 NC_005261.1 + 38915 0.68 0.824338
Target:  5'- gGCGCGc-GGGC-CCGCGCGCCAa--- -3'
miRNA:   3'- -UGCGCaaCUUGuGGCGCGUGGUgcac -5'
23738 5' -55.4 NC_005261.1 + 39540 0.66 0.912395
Target:  5'- uACGCGgccgccAGCcCCGCGCGCgCGCGg- -3'
miRNA:   3'- -UGCGCaac---UUGuGGCGCGUG-GUGCac -5'
23738 5' -55.4 NC_005261.1 + 39594 0.71 0.691028
Target:  5'- -aGCGccGAGCGCCGCGCGCCccCGc- -3'
miRNA:   3'- ugCGCaaCUUGUGGCGCGUGGu-GCac -5'
23738 5' -55.4 NC_005261.1 + 40394 0.66 0.906294
Target:  5'- -aGCGggagGAcACGCUGCGCgacaggGCCACGUa -3'
miRNA:   3'- ugCGCaa--CU-UGUGGCGCG------UGGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 41386 0.69 0.780393
Target:  5'- -gGCuGUUGAGCACguaaguuacguccgaGCGCGCCACGa- -3'
miRNA:   3'- ugCG-CAACUUGUGg--------------CGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 42494 0.69 0.788739
Target:  5'- uGCGCGgc-GACGCgCGuCGCGCC-CGUGa -3'
miRNA:   3'- -UGCGCaacUUGUG-GC-GCGUGGuGCAC- -5'
23738 5' -55.4 NC_005261.1 + 43018 0.7 0.731234
Target:  5'- gGCGUGUacAGCGCCGUGCGCUGCa-- -3'
miRNA:   3'- -UGCGCAacUUGUGGCGCGUGGUGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.