miRNA display CGI


Results 61 - 80 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 5' -55.4 NC_005261.1 + 43086 0.72 0.619085
Target:  5'- aACGCua--AACGCCGCGCGCUACGa- -3'
miRNA:   3'- -UGCGcaacUUGUGGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 43145 0.66 0.906294
Target:  5'- cGCGCGgccUGcGCGCCGCcGaCAUCGCGg- -3'
miRNA:   3'- -UGCGCa--ACuUGUGGCG-C-GUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 43800 0.7 0.701177
Target:  5'- cGCGgGUgaggGGGCGCCggGCGCGCCcucCGUGg -3'
miRNA:   3'- -UGCgCAa---CUUGUGG--CGCGUGGu--GCAC- -5'
23738 5' -55.4 NC_005261.1 + 44022 0.73 0.578009
Target:  5'- gGCGCGgcGGGCggccGCCGCGCggcgGCCGCGg- -3'
miRNA:   3'- -UGCGCaaCUUG----UGGCGCG----UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 44587 0.66 0.904417
Target:  5'- uGCGCGUccGGCGCuucggcuuccugauCGCGCACCaggagGCGUGc -3'
miRNA:   3'- -UGCGCAacUUGUG--------------GCGCGUGG-----UGCAC- -5'
23738 5' -55.4 NC_005261.1 + 44861 0.7 0.711268
Target:  5'- cCGCGaggaaGAGCGCCGCcgcgaGCGCCGCGg- -3'
miRNA:   3'- uGCGCaa---CUUGUGGCG-----CGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 45631 0.68 0.849204
Target:  5'- gGCGCGgcGGGC-CCGCGCcggagcaguGCCcagcggGCGUGa -3'
miRNA:   3'- -UGCGCaaCUUGuGGCGCG---------UGG------UGCAC- -5'
23738 5' -55.4 NC_005261.1 + 45961 0.69 0.770045
Target:  5'- gGCGcCGUUGAGCA-UGCGCGCCAg--- -3'
miRNA:   3'- -UGC-GCAACUUGUgGCGCGUGGUgcac -5'
23738 5' -55.4 NC_005261.1 + 46203 0.68 0.832815
Target:  5'- aGCGCacgu--CGCCGCGCcgcucgaagGCCGCGUGg -3'
miRNA:   3'- -UGCGcaacuuGUGGCGCG---------UGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 46670 0.73 0.547588
Target:  5'- cGCGCGUUG---GCCGCGCGcuCCACGg- -3'
miRNA:   3'- -UGCGCAACuugUGGCGCGU--GGUGCac -5'
23738 5' -55.4 NC_005261.1 + 46811 0.7 0.731234
Target:  5'- cGCGCGcgGAugGCgCGCGCcagGCgCGCGUGc -3'
miRNA:   3'- -UGCGCaaCUugUG-GCGCG---UG-GUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 46996 0.67 0.88657
Target:  5'- aGCGC-----GCGCCGCGCcGCCGCGa- -3'
miRNA:   3'- -UGCGcaacuUGUGGCGCG-UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 47277 0.76 0.388853
Target:  5'- -gGCGaaGAGCGCCGCGUGCCACuGUGc -3'
miRNA:   3'- ugCGCaaCUUGUGGCGCGUGGUG-CAC- -5'
23738 5' -55.4 NC_005261.1 + 47630 0.67 0.864794
Target:  5'- cCGCGgc---CGCCGCGCgcACCGCGUc -3'
miRNA:   3'- uGCGCaacuuGUGGCGCG--UGGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 47922 0.69 0.788739
Target:  5'- cGCGCGgccgucACGucCCGCGCGCCGCGc- -3'
miRNA:   3'- -UGCGCaacu--UGU--GGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 47955 0.7 0.711268
Target:  5'- aGCGCGUUc-ACGCUGCGCGCgagCACGUc -3'
miRNA:   3'- -UGCGCAAcuUGUGGCGCGUG---GUGCAc -5'
23738 5' -55.4 NC_005261.1 + 49300 0.73 0.578009
Target:  5'- cCGCGgcggUGAGCGCCGCGCAgcCCuCGa- -3'
miRNA:   3'- uGCGCa---ACUUGUGGCGCGU--GGuGCac -5'
23738 5' -55.4 NC_005261.1 + 49432 0.69 0.779459
Target:  5'- aGCGCGgaaacagcgcGAGCcCgCGCGCGCCGCGg- -3'
miRNA:   3'- -UGCGCaa--------CUUGuG-GCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 49822 0.66 0.912395
Target:  5'- gGCGCGUgGAguuaaGCACCa-GCACCgaggGCGUGa -3'
miRNA:   3'- -UGCGCAaCU-----UGUGGcgCGUGG----UGCAC- -5'
23738 5' -55.4 NC_005261.1 + 50039 0.68 0.849204
Target:  5'- cGCGCGacggUGcAGCGCCGCcGCgagaagcccgcuGCCGCGUa -3'
miRNA:   3'- -UGCGCa---AC-UUGUGGCG-CG------------UGGUGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.