miRNA display CGI


Results 81 - 100 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 5' -55.4 NC_005261.1 + 51479 0.66 0.893378
Target:  5'- -gGCGcUGAuCACCG-GCGCCGCGc- -3'
miRNA:   3'- ugCGCaACUuGUGGCgCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 53108 0.67 0.88657
Target:  5'- aGCGCcgc-GGCGCUGCGCGCCGCc-- -3'
miRNA:   3'- -UGCGcaacUUGUGGCGCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 53144 0.66 0.899954
Target:  5'- uACGCGc---GCGCCGuCGCGCCGcCGUc -3'
miRNA:   3'- -UGCGCaacuUGUGGC-GCGUGGU-GCAc -5'
23738 5' -55.4 NC_005261.1 + 53699 0.74 0.488464
Target:  5'- -aGCccccGGGCGCCGCGCGCCGCGg- -3'
miRNA:   3'- ugCGcaa-CUUGUGGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 53943 0.68 0.824338
Target:  5'- aGCGCGgc--GCGCCGCGC-UCGCGg- -3'
miRNA:   3'- -UGCGCaacuUGUGGCGCGuGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 53982 0.69 0.760506
Target:  5'- aGCGCGgcGAGCuCCaGCGCGCgGCGc- -3'
miRNA:   3'- -UGCGCaaCUUGuGG-CGCGUGgUGCac -5'
23738 5' -55.4 NC_005261.1 + 54072 0.7 0.711268
Target:  5'- gUGCGgucGAAgGCCGCGCggaccGCCACGUu -3'
miRNA:   3'- uGCGCaa-CUUgUGGCGCG-----UGGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 54258 0.71 0.691028
Target:  5'- aGCGCGcccuGGCGCCGCGCACaCugGa- -3'
miRNA:   3'- -UGCGCaac-UUGUGGCGCGUG-GugCac -5'
23738 5' -55.4 NC_005261.1 + 54638 0.67 0.857103
Target:  5'- cCGCG-UGAugAgCGCGC-CCGCGg- -3'
miRNA:   3'- uGCGCaACUugUgGCGCGuGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 55154 0.69 0.797876
Target:  5'- uGCGCGcgcGAGCGCCGC-CGCCGgCGg- -3'
miRNA:   3'- -UGCGCaa-CUUGUGGCGcGUGGU-GCac -5'
23738 5' -55.4 NC_005261.1 + 56592 0.68 0.803285
Target:  5'- gGCGCGgaccccccgcGCGCCaaGCGCGCgCGCGUGg -3'
miRNA:   3'- -UGCGCaacu------UGUGG--CGCGUG-GUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 57582 0.68 0.824338
Target:  5'- cCGCGUUGAGCGCguCGaUGUGCCACcUGg -3'
miRNA:   3'- uGCGCAACUUGUG--GC-GCGUGGUGcAC- -5'
23738 5' -55.4 NC_005261.1 + 57610 0.67 0.857103
Target:  5'- -gGCGgcGcACGCCGCGCAgcccuCCGgGUGg -3'
miRNA:   3'- ugCGCaaCuUGUGGCGCGU-----GGUgCAC- -5'
23738 5' -55.4 NC_005261.1 + 57932 0.66 0.918256
Target:  5'- cGCGCGUgcUGcccGGCACCaGCGC-CCGUGUGc -3'
miRNA:   3'- -UGCGCA--AC---UUGUGG-CGCGuGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 57985 0.67 0.857103
Target:  5'- cGCGCGgcc-GCGCCGCcaaaaaGCGCCaggACGUGg -3'
miRNA:   3'- -UGCGCaacuUGUGGCG------CGUGG---UGCAC- -5'
23738 5' -55.4 NC_005261.1 + 58161 0.68 0.849204
Target:  5'- cACGCGc-GAGuCGCUGCGCACgAgGUGc -3'
miRNA:   3'- -UGCGCaaCUU-GUGGCGCGUGgUgCAC- -5'
23738 5' -55.4 NC_005261.1 + 58214 0.66 0.906294
Target:  5'- cGCGCGcc-AGCAgCGCGC-CCGCGg- -3'
miRNA:   3'- -UGCGCaacUUGUgGCGCGuGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 58258 0.67 0.879534
Target:  5'- cCGCGcc--GCGCCGCGCucGCCGCGc- -3'
miRNA:   3'- uGCGCaacuUGUGGCGCG--UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 58796 0.71 0.680829
Target:  5'- cGCGCGcagGAAgGCCGgcacgcgcCGCGCCACGUc -3'
miRNA:   3'- -UGCGCaa-CUUgUGGC--------GCGUGGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 59070 0.69 0.779459
Target:  5'- cCGCGgaGAGCGCgCGCggguGCGCCGCGc- -3'
miRNA:   3'- uGCGCaaCUUGUG-GCG----CGUGGUGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.