miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 5' -55.4 NC_005261.1 + 136906 0.69 0.788739
Target:  5'- gGCGUGgUGuGgGCCGCGCgGCCGCGg- -3'
miRNA:   3'- -UGCGCaACuUgUGGCGCG-UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 136607 0.66 0.918256
Target:  5'- -aGCGUgGAGCGgCGCGCGCgCGCc-- -3'
miRNA:   3'- ugCGCAaCUUGUgGCGCGUG-GUGcac -5'
23738 5' -55.4 NC_005261.1 + 135010 0.66 0.893378
Target:  5'- gGCGCGgcGGGC-CCGCacGCgGCCGCGg- -3'
miRNA:   3'- -UGCGCaaCUUGuGGCG--CG-UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 133819 0.7 0.731234
Target:  5'- -gGCGacGAgGCGCUGCGCGgCCGCGUGc -3'
miRNA:   3'- ugCGCaaCU-UGUGGCGCGU-GGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 133268 0.67 0.88657
Target:  5'- cGCGCGaguaccaGGGCGCCgGCGCccGCCuCGUGg -3'
miRNA:   3'- -UGCGCaa-----CUUGUGG-CGCG--UGGuGCAC- -5'
23738 5' -55.4 NC_005261.1 + 133033 0.76 0.405968
Target:  5'- gGCGCGc----CACCGCGCACgCACGUGc -3'
miRNA:   3'- -UGCGCaacuuGUGGCGCGUG-GUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 132964 0.72 0.609812
Target:  5'- gACGUGgccgccuucguCGCCGCGCACCGCGa- -3'
miRNA:   3'- -UGCGCaacuu------GUGGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 131777 0.68 0.815684
Target:  5'- gGCGCGccgcUGGgccccgACGCCGCGCccGCCGCGc- -3'
miRNA:   3'- -UGCGCa---ACU------UGUGGCGCG--UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 131199 0.68 0.815684
Target:  5'- gGCGCGgucgcCGCCgGCGCGCCcgcguACGUGg -3'
miRNA:   3'- -UGCGCaacuuGUGG-CGCGUGG-----UGCAC- -5'
23738 5' -55.4 NC_005261.1 + 130854 0.66 0.923875
Target:  5'- cGCGCGcgcccgGCCGgGCGCCGCGg- -3'
miRNA:   3'- -UGCGCaacuugUGGCgCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 130787 0.66 0.912395
Target:  5'- cCGCGcUGGccGCACCGCGgACgACGc- -3'
miRNA:   3'- uGCGCaACU--UGUGGCGCgUGgUGCac -5'
23738 5' -55.4 NC_005261.1 + 130738 0.66 0.906294
Target:  5'- cCGCcgacaUGAuCGCCGCGCugCugGUa -3'
miRNA:   3'- uGCGca---ACUuGUGGCGCGugGugCAc -5'
23738 5' -55.4 NC_005261.1 + 130633 0.66 0.893378
Target:  5'- aGCGCGcgGGGCGCgCGUGCGCuCGCc-- -3'
miRNA:   3'- -UGCGCaaCUUGUG-GCGCGUG-GUGcac -5'
23738 5' -55.4 NC_005261.1 + 130135 0.72 0.608782
Target:  5'- cGCGCGccGucCGCCgaGCGCACCACGUc -3'
miRNA:   3'- -UGCGCaaCuuGUGG--CGCGUGGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 129569 0.7 0.710262
Target:  5'- -gGCGUaGAggaggagGCgGCCGCGCGCCGCGg- -3'
miRNA:   3'- ugCGCAaCU-------UG-UGGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 129038 0.67 0.879534
Target:  5'- uACGCGgcaGACgcccacgcuGCCGCGCcCUACGUGu -3'
miRNA:   3'- -UGCGCaacUUG---------UGGCGCGuGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 128410 0.69 0.770045
Target:  5'- uCGCGUccagcaagGggUcaagGCCGCGCACCAUGg- -3'
miRNA:   3'- uGCGCAa-------CuuG----UGGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 127703 0.67 0.88657
Target:  5'- gGCGcCGgagGAGCugCGCGUggccuGCCugGUa -3'
miRNA:   3'- -UGC-GCaa-CUUGugGCGCG-----UGGugCAc -5'
23738 5' -55.4 NC_005261.1 + 127346 0.72 0.639713
Target:  5'- -aGCGgcgGGGCGCUGgGC-CCGCGUGg -3'
miRNA:   3'- ugCGCaa-CUUGUGGCgCGuGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 126939 0.67 0.872273
Target:  5'- aGCGCGgccagGGGCGCCGgGCGCgGgGg- -3'
miRNA:   3'- -UGCGCaa---CUUGUGGCgCGUGgUgCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.