miRNA display CGI


Results 21 - 40 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 5' -55.4 NC_005261.1 + 126016 0.72 0.619085
Target:  5'- cCGUaGUUGAucGCGCCGCGCgGCCGCGc- -3'
miRNA:   3'- uGCG-CAACU--UGUGGCGCG-UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 124981 0.67 0.857103
Target:  5'- cGCGCGggGGAaacuGCUGCGCAUaCACGg- -3'
miRNA:   3'- -UGCGCaaCUUg---UGGCGCGUG-GUGCac -5'
23738 5' -55.4 NC_005261.1 + 124569 0.68 0.815684
Target:  5'- gGCGCGc----CGCuCGCGCACCACGc- -3'
miRNA:   3'- -UGCGCaacuuGUG-GCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 124508 0.66 0.918256
Target:  5'- cCGgGUc---CACCGUGCuCCACGUGg -3'
miRNA:   3'- uGCgCAacuuGUGGCGCGuGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 124261 0.66 0.918256
Target:  5'- cGCGCGgcGccGC-CCGCGCGCCcCGg- -3'
miRNA:   3'- -UGCGCaaCu-UGuGGCGCGUGGuGCac -5'
23738 5' -55.4 NC_005261.1 + 122652 0.66 0.923875
Target:  5'- cGCGCGUacgUGGGCGCgaaGaGCAUCACGUu -3'
miRNA:   3'- -UGCGCA---ACUUGUGg--CgCGUGGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 121909 0.66 0.918256
Target:  5'- aGCuCGUcUGcGCGCCGUGCGCCGCc-- -3'
miRNA:   3'- -UGcGCA-ACuUGUGGCGCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 121810 0.68 0.849204
Target:  5'- gGCGCGUggcUGGGCuCUGCGggcCGCCGCGg- -3'
miRNA:   3'- -UGCGCA---ACUUGuGGCGC---GUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 120942 0.7 0.750852
Target:  5'- gGCGCGggaaggUGGAgGCuCGCGCcCCGCGg- -3'
miRNA:   3'- -UGCGCa-----ACUUgUG-GCGCGuGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 120232 0.68 0.824338
Target:  5'- cCGaCGUgGAGCGCCGCuuCGCCGCGg- -3'
miRNA:   3'- uGC-GCAaCUUGUGGCGc-GUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 118932 0.69 0.760506
Target:  5'- gGCGCG----GCGCCGCGCggcugGCCGCGg- -3'
miRNA:   3'- -UGCGCaacuUGUGGCGCG-----UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 118850 0.74 0.527588
Target:  5'- gGCGCGgaGGGCGgCGCGC-CCGCGg- -3'
miRNA:   3'- -UGCGCaaCUUGUgGCGCGuGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 118680 0.67 0.864794
Target:  5'- -gGCGgcGGGCGCUgGCGCACgCGCGg- -3'
miRNA:   3'- ugCGCaaCUUGUGG-CGCGUG-GUGCac -5'
23738 5' -55.4 NC_005261.1 + 118578 0.72 0.588237
Target:  5'- cGCGCGgcGGcgcGCGCCGC-CGCCGCGg- -3'
miRNA:   3'- -UGCGCaaCU---UGUGGCGcGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 118553 0.73 0.547588
Target:  5'- cGCGCGcgaGGACGCCGUGC-CCGCGc- -3'
miRNA:   3'- -UGCGCaa-CUUGUGGCGCGuGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 118260 0.7 0.731234
Target:  5'- gGCGUGccggUGcACugCGCGCACUuCGUGa -3'
miRNA:   3'- -UGCGCa---ACuUGugGCGCGUGGuGCAC- -5'
23738 5' -55.4 NC_005261.1 + 116497 0.68 0.841106
Target:  5'- cGCGCGguauaaaGAGCGCCGC-CGCgGCGg- -3'
miRNA:   3'- -UGCGCaa-----CUUGUGGCGcGUGgUGCac -5'
23738 5' -55.4 NC_005261.1 + 116073 0.71 0.650022
Target:  5'- gGCGCGccgguccccgUGGAUGCCGCGguCCGCGa- -3'
miRNA:   3'- -UGCGCa---------ACUUGUGGCGCguGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 115843 0.66 0.899954
Target:  5'- gGCGCGUUG-GC-CCGCGCGgcccCCGCc-- -3'
miRNA:   3'- -UGCGCAACuUGuGGCGCGU----GGUGcac -5'
23738 5' -55.4 NC_005261.1 + 115175 0.68 0.830291
Target:  5'- uGCGCGaUGGGCACgCGCuucagcacggcccaGCGCC-CGUGc -3'
miRNA:   3'- -UGCGCaACUUGUG-GCG--------------CGUGGuGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.