miRNA display CGI


Results 41 - 60 of 266 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 5' -55.4 NC_005261.1 + 114600 0.66 0.896037
Target:  5'- cCGCGaggcuguggagaUUGAGCGCgaguuuauuuggucaCGCGCGCCGCGc- -3'
miRNA:   3'- uGCGC------------AACUUGUG---------------GCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 114274 0.73 0.578009
Target:  5'- gACGCGgu-GGCGCgCGCGgGCUACGUGg -3'
miRNA:   3'- -UGCGCaacUUGUG-GCGCgUGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 113017 0.68 0.816557
Target:  5'- -gGCGggcaguaccccacaGAGCggGCCGCGCGCgGCGUGg -3'
miRNA:   3'- ugCGCaa------------CUUG--UGGCGCGUGgUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 112014 0.67 0.88657
Target:  5'- uCGUGcgGAuCGCCGCaacagcCGCCACGUGg -3'
miRNA:   3'- uGCGCaaCUuGUGGCGc-----GUGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 111849 0.68 0.824338
Target:  5'- aGCGCGUgc-GCGCCaacCGCGCCuuCGUGg -3'
miRNA:   3'- -UGCGCAacuUGUGGc--GCGUGGu-GCAC- -5'
23738 5' -55.4 NC_005261.1 + 110930 0.71 0.650022
Target:  5'- cCGCGcUGGGCACCGaGCGCCGCc-- -3'
miRNA:   3'- uGCGCaACUUGUGGCgCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 110680 0.73 0.578009
Target:  5'- aGCGCcugGAGCAcgagggcuuCCGCGC-CCACGUGg -3'
miRNA:   3'- -UGCGcaaCUUGU---------GGCGCGuGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 110247 0.66 0.923875
Target:  5'- gGCGCGgcgcccgGGGgGCUGCGgGCCucccuCGUGg -3'
miRNA:   3'- -UGCGCaa-----CUUgUGGCGCgUGGu----GCAC- -5'
23738 5' -55.4 NC_005261.1 + 109515 0.66 0.899954
Target:  5'- cCGCGggGuuuAUugCGCGCccGCCGCGg- -3'
miRNA:   3'- uGCGCaaCu--UGugGCGCG--UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 109222 0.72 0.619085
Target:  5'- gGCGCGgc--ACGCCGCGCGCUGCa-- -3'
miRNA:   3'- -UGCGCaacuUGUGGCGCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 109010 0.67 0.872273
Target:  5'- uGCGCGUUcaccgggccGAACGCCGCcguggcgcGCAgCCGCGc- -3'
miRNA:   3'- -UGCGCAA---------CUUGUGGCG--------CGU-GGUGCac -5'
23738 5' -55.4 NC_005261.1 + 108751 0.69 0.760506
Target:  5'- cCGCGgcGucCGCgGCGCGCCGCGc- -3'
miRNA:   3'- uGCGCaaCuuGUGgCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 108478 0.74 0.488464
Target:  5'- cCGCGUcgGcGCGCaCGCGCGCCGCGa- -3'
miRNA:   3'- uGCGCAa-CuUGUG-GCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 108395 0.67 0.879534
Target:  5'- cGCGCGcuccAGCAgCCGCGCcACCGCGc- -3'
miRNA:   3'- -UGCGCaac-UUGU-GGCGCG-UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 107630 0.72 0.629398
Target:  5'- uGCGCGggaacucGAGCGcCCGCGCugCGCGc- -3'
miRNA:   3'- -UGCGCaa-----CUUGU-GGCGCGugGUGCac -5'
23738 5' -55.4 NC_005261.1 + 107362 0.68 0.824338
Target:  5'- uGCGuCGUcgUGGGCGCCgggGCGC-CCGCGUc -3'
miRNA:   3'- -UGC-GCA--ACUUGUGG---CGCGuGGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 107020 0.66 0.906294
Target:  5'- cACGUGcccaagGAGCAggGCGCGCCACGc- -3'
miRNA:   3'- -UGCGCaa----CUUGUggCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 106977 0.82 0.191294
Target:  5'- gGCGCGc---GCGCCGCGCACCGCGUc -3'
miRNA:   3'- -UGCGCaacuUGUGGCGCGUGGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 106681 0.69 0.760506
Target:  5'- cGCGCGcccGAGgGCCGCGCcgAUCGCGUc -3'
miRNA:   3'- -UGCGCaa-CUUgUGGCGCG--UGGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 106411 0.66 0.899954
Target:  5'- cGCGCGgcgcUGcAGCggGCCGCGguCCACGc- -3'
miRNA:   3'- -UGCGCa---AC-UUG--UGGCGCguGGUGCac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.