miRNA display CGI


Results 61 - 80 of 266 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 5' -55.4 NC_005261.1 + 105924 0.69 0.788739
Target:  5'- cGCGCGccc-ACGCCGCGCccuCCGCGa- -3'
miRNA:   3'- -UGCGCaacuUGUGGCGCGu--GGUGCac -5'
23738 5' -55.4 NC_005261.1 + 105603 0.67 0.879534
Target:  5'- cGCGCGacGAACGCC-UGCGgCACGUc -3'
miRNA:   3'- -UGCGCaaCUUGUGGcGCGUgGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 104258 0.68 0.824338
Target:  5'- cGCGCGc-GAGCGCCGCggucucggcgGCugCGCGg- -3'
miRNA:   3'- -UGCGCaaCUUGUGGCG----------CGugGUGCac -5'
23738 5' -55.4 NC_005261.1 + 104020 0.71 0.680829
Target:  5'- cGCGCGcUG--UACUGCGCGCCGCGc- -3'
miRNA:   3'- -UGCGCaACuuGUGGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 103331 0.66 0.918256
Target:  5'- aGCGCGUccaGGCGCCgguacagcuccGCGCGCCGCu-- -3'
miRNA:   3'- -UGCGCAac-UUGUGG-----------CGCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 103280 0.7 0.701177
Target:  5'- aGCGCGccGggUGCCGCGCGcagccCCGCGa- -3'
miRNA:   3'- -UGCGCaaCuuGUGGCGCGU-----GGUGCac -5'
23738 5' -55.4 NC_005261.1 + 102988 0.67 0.88657
Target:  5'- cGCGCGc--GACACggcggccgccaCGCGCuCCGCGUGg -3'
miRNA:   3'- -UGCGCaacUUGUG-----------GCGCGuGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 102821 0.7 0.750852
Target:  5'- cGCGCGccGGucuGCGCCucgcgcCGCGCCACGUGc -3'
miRNA:   3'- -UGCGCaaCU---UGUGGc-----GCGUGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 102670 0.7 0.750852
Target:  5'- cCGCGgcGcccAGCGCCGCGUccGCCGCGg- -3'
miRNA:   3'- uGCGCaaC---UUGUGGCGCG--UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 102325 0.66 0.911796
Target:  5'- cCGCGgcGcGCAgCCGCGCcagcucgGCCGCGUc -3'
miRNA:   3'- uGCGCaaCuUGU-GGCGCG-------UGGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 102299 0.72 0.606723
Target:  5'- cCGCGggucguaGCCGCGCGCCGCGg- -3'
miRNA:   3'- uGCGCaacuug-UGGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 101879 0.67 0.853968
Target:  5'- cGCGCGcaGGGCGCCcagccgcGCGCgcuccuccucgaaaGCCGCGUGc -3'
miRNA:   3'- -UGCGCaaCUUGUGG-------CGCG--------------UGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 101831 0.7 0.711268
Target:  5'- cGCGCGgcUGAucucCGCCGCGCGCC-CGc- -3'
miRNA:   3'- -UGCGCa-ACUu---GUGGCGCGUGGuGCac -5'
23738 5' -55.4 NC_005261.1 + 101227 0.67 0.885877
Target:  5'- aGCGCGUcGAggugGCGCCucagcucGCGCAgCGCGUc -3'
miRNA:   3'- -UGCGCAaCU----UGUGG-------CGCGUgGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 101020 0.66 0.906294
Target:  5'- aGCGCGccugUGAACGCgGCcgGCAgCCGCGc- -3'
miRNA:   3'- -UGCGCa---ACUUGUGgCG--CGU-GGUGCac -5'
23738 5' -55.4 NC_005261.1 + 100987 0.66 0.911796
Target:  5'- aGCGCGU----CGCCGCGCuccgccaGCCGCGc- -3'
miRNA:   3'- -UGCGCAacuuGUGGCGCG-------UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 100897 0.74 0.517689
Target:  5'- uACGCGgccu-CGCCGCGCACCGCc-- -3'
miRNA:   3'- -UGCGCaacuuGUGGCGCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 100722 0.7 0.741091
Target:  5'- cCGCGgcc-GCGCCGCGCGCgCGCGc- -3'
miRNA:   3'- uGCGCaacuUGUGGCGCGUG-GUGCac -5'
23738 5' -55.4 NC_005261.1 + 100683 0.69 0.788739
Target:  5'- cGCGCGagu-GCACCGCG-GCCGCGg- -3'
miRNA:   3'- -UGCGCaacuUGUGGCGCgUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 99854 0.66 0.893378
Target:  5'- -aGCGgcaccGGcCGCCGCGCGCCGCc-- -3'
miRNA:   3'- ugCGCaa---CUuGUGGCGCGUGGUGcac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.