miRNA display CGI


Results 41 - 60 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 5' -55.4 NC_005261.1 + 68167 0.76 0.380475
Target:  5'- cGCGCGcgGAGCuCgCGCGCGCCGCGg- -3'
miRNA:   3'- -UGCGCaaCUUGuG-GCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 1321 0.77 0.340429
Target:  5'- cACGCGcuccgGGACGCCGcCGCGCCGCGc- -3'
miRNA:   3'- -UGCGCaa---CUUGUGGC-GCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 64144 0.78 0.325287
Target:  5'- aGCGCGUccUGGcccaGC-CCGCGCAUCGCGUGc -3'
miRNA:   3'- -UGCGCA--ACU----UGuGGCGCGUGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 76420 0.78 0.325287
Target:  5'- gGCGCGUgcaGAGCGCCG-GCGCCAUGg- -3'
miRNA:   3'- -UGCGCAa--CUUGUGGCgCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 31974 0.81 0.222151
Target:  5'- cACGCGccUGGGC-CCGCGCACCGCGg- -3'
miRNA:   3'- -UGCGCa-ACUUGuGGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 100897 0.74 0.517689
Target:  5'- uACGCGgccu-CGCCGCGCACCGCc-- -3'
miRNA:   3'- -UGCGCaacuuGUGGCGCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 118850 0.74 0.527588
Target:  5'- gGCGCGgaGGGCGgCGCGC-CCGCGg- -3'
miRNA:   3'- -UGCGCaaCUUGUgGCGCGuGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 130135 0.72 0.608782
Target:  5'- cGCGCGccGucCGCCgaGCGCACCACGUc -3'
miRNA:   3'- -UGCGCaaCuuGUGG--CGCGUGGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 60706 0.72 0.608782
Target:  5'- cGCGCGUggcgGcGCACgGCGgugcCACCGCGUGc -3'
miRNA:   3'- -UGCGCAa---CuUGUGgCGC----GUGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 102299 0.72 0.606723
Target:  5'- cCGCGggucguaGCCGCGCGCCGCGg- -3'
miRNA:   3'- uGCGCaacuug-UGGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 17646 0.72 0.598497
Target:  5'- uCGCGaggccgaUGAGgAUgGCGCGCCGCGUGg -3'
miRNA:   3'- uGCGCa------ACUUgUGgCGCGUGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 118578 0.72 0.588237
Target:  5'- cGCGCGgcGGcgcGCGCCGC-CGCCGCGg- -3'
miRNA:   3'- -UGCGCaaCU---UGUGGCGcGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 4929 0.72 0.588237
Target:  5'- cCGCGgccgcGAGCGCC-CGCGCCGCGg- -3'
miRNA:   3'- uGCGCaa---CUUGUGGcGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 114274 0.73 0.578009
Target:  5'- gACGCGgu-GGCGCgCGCGgGCUACGUGg -3'
miRNA:   3'- -UGCGCaacUUGUG-GCGCgUGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 110680 0.73 0.578009
Target:  5'- aGCGCcugGAGCAcgagggcuuCCGCGC-CCACGUGg -3'
miRNA:   3'- -UGCGcaaCUUGU---------GGCGCGuGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 44022 0.73 0.578009
Target:  5'- gGCGCGgcGGGCggccGCCGCGCggcgGCCGCGg- -3'
miRNA:   3'- -UGCGCaaCUUG----UGGCGCG----UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 49300 0.73 0.578009
Target:  5'- cCGCGgcggUGAGCGCCGCGCAgcCCuCGa- -3'
miRNA:   3'- uGCGCa---ACUUGUGGCGCGU--GGuGCac -5'
23738 5' -55.4 NC_005261.1 + 118553 0.73 0.547588
Target:  5'- cGCGCGcgaGGACGCCGUGC-CCGCGc- -3'
miRNA:   3'- -UGCGCaa-CUUGUGGCGCGuGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 46670 0.73 0.547588
Target:  5'- cGCGCGUUG---GCCGCGCGcuCCACGg- -3'
miRNA:   3'- -UGCGCAACuugUGGCGCGU--GGUGCac -5'
23738 5' -55.4 NC_005261.1 + 98277 0.74 0.527588
Target:  5'- cGCGCGUUcGACGCCcgGCGCGuCCGCGg- -3'
miRNA:   3'- -UGCGCAAcUUGUGG--CGCGU-GGUGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.