miRNA display CGI


Results 81 - 100 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23738 5' -55.4 NC_005261.1 + 1922 0.71 0.660317
Target:  5'- cGCGCGgcGcacuGCGCCGCgggcaGCACCGCGg- -3'
miRNA:   3'- -UGCGCaaCu---UGUGGCG-----CGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 91437 0.71 0.660317
Target:  5'- cCGCGgUGAacGCGCUGCGCGgCACGg- -3'
miRNA:   3'- uGCGCaACU--UGUGGCGCGUgGUGCac -5'
23738 5' -55.4 NC_005261.1 + 85157 0.71 0.670589
Target:  5'- gACGUaGUUGAugGCCGCGUA-CGCGUc -3'
miRNA:   3'- -UGCG-CAACUugUGGCGCGUgGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 81815 0.71 0.670589
Target:  5'- uGCGCGgcggUG-ACGCCcCGCGCCGCGc- -3'
miRNA:   3'- -UGCGCa---ACuUGUGGcGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 98197 0.71 0.670589
Target:  5'- gGCGCGgcGGGCAgCGgGCGCCGCc-- -3'
miRNA:   3'- -UGCGCaaCUUGUgGCgCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 30138 0.71 0.670589
Target:  5'- gACGCGgugGAGCGCgCGCGCcuuagcggcGCCGCGc- -3'
miRNA:   3'- -UGCGCaa-CUUGUG-GCGCG---------UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 92564 0.71 0.670589
Target:  5'- cGCGCGccccGcGCGCCGCGCGCCcACGc- -3'
miRNA:   3'- -UGCGCaa--CuUGUGGCGCGUGG-UGCac -5'
23738 5' -55.4 NC_005261.1 + 72481 0.71 0.647961
Target:  5'- aGCGCGgccagcgccagGAGCGCCGCGCGaaGCGg- -3'
miRNA:   3'- -UGCGCaa---------CUUGUGGCGCGUggUGCac -5'
23738 5' -55.4 NC_005261.1 + 127346 0.72 0.639713
Target:  5'- -aGCGgcgGGGCGCUGgGC-CCGCGUGg -3'
miRNA:   3'- ugCGCaa-CUUGUGGCgCGuGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 14227 0.72 0.629398
Target:  5'- cGCGCGgUGAAgACCGCGCcgGCCGgGg- -3'
miRNA:   3'- -UGCGCaACUUgUGGCGCG--UGGUgCac -5'
23738 5' -55.4 NC_005261.1 + 102299 0.72 0.606723
Target:  5'- cCGCGggucguaGCCGCGCGCCGCGg- -3'
miRNA:   3'- uGCGCaacuug-UGGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 60706 0.72 0.608782
Target:  5'- cGCGCGUggcgGcGCACgGCGgugcCACCGCGUGc -3'
miRNA:   3'- -UGCGCAa---CuUGUGgCGC----GUGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 130135 0.72 0.608782
Target:  5'- cGCGCGccGucCGCCgaGCGCACCACGUc -3'
miRNA:   3'- -UGCGCaaCuuGUGG--CGCGUGGUGCAc -5'
23738 5' -55.4 NC_005261.1 + 132964 0.72 0.609812
Target:  5'- gACGUGgccgccuucguCGCCGCGCACCGCGa- -3'
miRNA:   3'- -UGCGCaacuu------GUGGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 73530 0.72 0.619085
Target:  5'- cCGUGggGAACAUCGUGCGCCA-GUa -3'
miRNA:   3'- uGCGCaaCUUGUGGCGCGUGGUgCAc -5'
23738 5' -55.4 NC_005261.1 + 109222 0.72 0.619085
Target:  5'- gGCGCGgc--ACGCCGCGCGCUGCa-- -3'
miRNA:   3'- -UGCGCaacuUGUGGCGCGUGGUGcac -5'
23738 5' -55.4 NC_005261.1 + 126016 0.72 0.619085
Target:  5'- cCGUaGUUGAucGCGCCGCGCgGCCGCGc- -3'
miRNA:   3'- uGCG-CAACU--UGUGGCGCG-UGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 43086 0.72 0.619085
Target:  5'- aACGCua--AACGCCGCGCGCUACGa- -3'
miRNA:   3'- -UGCGcaacUUGUGGCGCGUGGUGCac -5'
23738 5' -55.4 NC_005261.1 + 64015 0.72 0.626304
Target:  5'- aGCGCGUaggUGAgcguguucucgucgGCGCgGCucuGCGCCGCGUGg -3'
miRNA:   3'- -UGCGCA---ACU--------------UGUGgCG---CGUGGUGCAC- -5'
23738 5' -55.4 NC_005261.1 + 107630 0.72 0.629398
Target:  5'- uGCGCGggaacucGAGCGcCCGCGCugCGCGc- -3'
miRNA:   3'- -UGCGCaa-----CUUGU-GGCGCGugGUGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.