miRNA display CGI


Results 21 - 40 of 290 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23739 5' -64.5 NC_005261.1 + 33697 0.66 0.486587
Target:  5'- gGGGUCGcGCGgggcccgcUGCACgaGGGGCGGUGg- -3'
miRNA:   3'- -UCCGGCuCGC--------GCGUG--UCCCGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 137063 0.66 0.486587
Target:  5'- cAGGCgCGgaGGCGCGgGCAcccauGGCGGCGc- -3'
miRNA:   3'- -UCCG-GC--UCGCGCgUGUc----CCGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 98444 0.66 0.486587
Target:  5'- cGGGCCGguaggcGGCGCcCGCAaaauccgacGGGCGGcCGUc -3'
miRNA:   3'- -UCCGGC------UCGCGcGUGU---------CCCGCC-GCAu -5'
23739 5' -64.5 NC_005261.1 + 128101 0.66 0.486587
Target:  5'- cGGgCGAGCG-GCGCGGcGCGGgGUn -3'
miRNA:   3'- uCCgGCUCGCgCGUGUCcCGCCgCAu -5'
23739 5' -64.5 NC_005261.1 + 67514 0.66 0.48567
Target:  5'- uAGGCC-AGCGuCGcCGCGGcgcccgcGGCGGCGa- -3'
miRNA:   3'- -UCCGGcUCGC-GC-GUGUC-------CCGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 97590 0.66 0.477454
Target:  5'- cGGGCgGAGCGgGCGgAgcGGGCGgaGCGg- -3'
miRNA:   3'- -UCCGgCUCGCgCGUgU--CCCGC--CGCau -5'
23739 5' -64.5 NC_005261.1 + 15032 0.66 0.476545
Target:  5'- gGGuGCCGGGgGCGUAgCGGGgggggucggggucGCGGCGg- -3'
miRNA:   3'- -UC-CGGCUCgCGCGU-GUCC-------------CGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 101860 0.66 0.476545
Target:  5'- cGGCCGccugcAGCacguccGCGCGCAGGGCGcccagccGCGc- -3'
miRNA:   3'- uCCGGC-----UCG------CGCGUGUCCCGC-------CGCau -5'
23739 5' -64.5 NC_005261.1 + 109021 0.66 0.475638
Target:  5'- cGGGCCGAacgccgccgugGCGCGCAgccgcgcggccgcCAGGuagcccaGCGGCGc- -3'
miRNA:   3'- -UCCGGCU-----------CGCGCGU-------------GUCC-------CGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 121104 0.66 0.47473
Target:  5'- cAGGCCGugcggguccucuagGGCGCggagGCGCGGGcGCGaGCGc- -3'
miRNA:   3'- -UCCGGC--------------UCGCG----CGUGUCC-CGC-CGCau -5'
23739 5' -64.5 NC_005261.1 + 41186 0.66 0.47473
Target:  5'- cAGGCCGGGCGUGCGCAaaaaguuguaaaaGGCGa- -3'
miRNA:   3'- -UCCGGCUCGCGCGUGUcccg---------CCGCau -5'
23739 5' -64.5 NC_005261.1 + 60864 0.66 0.468407
Target:  5'- cGGGCCGAGCcCGCGCcGuGuucacccgcGCGGCGg- -3'
miRNA:   3'- -UCCGGCUCGcGCGUGuC-C---------CGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 98204 0.66 0.468407
Target:  5'- cGGGCagCGGGCGcCGCcacgGCAGcGCGGCGg- -3'
miRNA:   3'- -UCCG--GCUCGC-GCG----UGUCcCGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 102857 0.66 0.468407
Target:  5'- uGGGCCaGcAGCGCGUcCAGGaaGGCGa- -3'
miRNA:   3'- -UCCGG-C-UCGCGCGuGUCCcgCCGCau -5'
23739 5' -64.5 NC_005261.1 + 38339 0.66 0.463021
Target:  5'- -uGCUcugGGGCGCGCACgcccagcgggccuuuGGGGCGGCc-- -3'
miRNA:   3'- ucCGG---CUCGCGCGUG---------------UCCCGCCGcau -5'
23739 5' -64.5 NC_005261.1 + 129192 0.66 0.463021
Target:  5'- cAGGCC-AGCGCGUggcgcagcugcuucuGCuGGuGCGGCGc- -3'
miRNA:   3'- -UCCGGcUCGCGCG---------------UGuCC-CGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 120283 0.66 0.459448
Target:  5'- cGcCCGAGCuGCGCGUguucuucgAGGGCGGCGa- -3'
miRNA:   3'- uCcGGCUCG-CGCGUG--------UCCCGCCGCau -5'
23739 5' -64.5 NC_005261.1 + 62298 0.66 0.459448
Target:  5'- cGGcGCCGcGCGgGCGCGcGGCGGCc-- -3'
miRNA:   3'- -UC-CGGCuCGCgCGUGUcCCGCCGcau -5'
23739 5' -64.5 NC_005261.1 + 34324 0.66 0.459448
Target:  5'- gAGGCCGAgGgGCcccaagggGC-CGGGGCGGCc-- -3'
miRNA:   3'- -UCCGGCU-CgCG--------CGuGUCCCGCCGcau -5'
23739 5' -64.5 NC_005261.1 + 38540 0.66 0.459448
Target:  5'- -cGCCGGGCacagcgccgGCGCGCGGccauGCGGCGg- -3'
miRNA:   3'- ucCGGCUCG---------CGCGUGUCc---CGCCGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.