Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2374 | 5' | -62.4 | NC_001416.1 | + | 5780 | 0.66 | 0.337648 |
Target: 5'- gGGCaacaguGACCCGGCUcaUACCGCaaCCG-Cg -3' miRNA: 3'- -CCGc-----CUGGGCCGA--AUGGCGgcGGCaG- -5' |
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2374 | 5' | -62.4 | NC_001416.1 | + | 6430 | 1.11 | 0.000145 |
Target: 5'- uGGCGGACCCGGCUUACCGCCGCCGUCg -3' miRNA: 3'- -CCGCCUGGGCCGAAUGGCGGCGGCAG- -5' |
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2374 | 5' | -62.4 | NC_001416.1 | + | 7895 | 0.74 | 0.096424 |
Target: 5'- uGGCGGAaguugucaucUCUGGCUuggacggggcgUACCGCCuGCCGUUa -3' miRNA: 3'- -CCGCCU----------GGGCCGA-----------AUGGCGG-CGGCAG- -5' |
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2374 | 5' | -62.4 | NC_001416.1 | + | 8024 | 0.72 | 0.14045 |
Target: 5'- cGGCGGuGCCUGGU--GCCGCCGCa--- -3' miRNA: 3'- -CCGCC-UGGGCCGaaUGGCGGCGgcag -5' |
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2374 | 5' | -62.4 | NC_001416.1 | + | 8641 | 0.66 | 0.361657 |
Target: 5'- aGGCGGAuuuUCCGGCagUUGCCGUuuaucucaccggCGCUGa- -3' miRNA: 3'- -CCGCCU---GGGCCG--AAUGGCG------------GCGGCag -5' |
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2374 | 5' | -62.4 | NC_001416.1 | + | 10132 | 0.67 | 0.279408 |
Target: 5'- uGCGGGCCCGGCgu-CCuCUGuCUGUUc -3' miRNA: 3'- cCGCCUGGGCCGaauGGcGGC-GGCAG- -5' |
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2374 | 5' | -62.4 | NC_001416.1 | + | 12303 | 0.68 | 0.272717 |
Target: 5'- uGGCGG-CCCGuuUUGCCcguuGCUGCUGUg -3' miRNA: 3'- -CCGCCuGGGCcgAAUGG----CGGCGGCAg -5' |
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2374 | 5' | -62.4 | NC_001416.1 | + | 16509 | 0.69 | 0.229446 |
Target: 5'- aGGUGauGCgCGGCUccgUGCCGCCaaaGCCGUCc -3' miRNA: 3'- -CCGCc-UGgGCCGA---AUGGCGG---CGGCAG- -5' |
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2374 | 5' | -62.4 | NC_001416.1 | + | 17300 | 0.7 | 0.197106 |
Target: 5'- cGGCGGugaUGGCaUACgUGCCGUCGUCg -3' miRNA: 3'- -CCGCCuggGCCGaAUG-GCGGCGGCAG- -5' |
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2374 | 5' | -62.4 | NC_001416.1 | + | 19037 | 0.68 | 0.24359 |
Target: 5'- cGGUGGGCuauuuucaagugaaaCCGGguacaUUGCCGUCGuuGUCg -3' miRNA: 3'- -CCGCCUG---------------GGCCg----AAUGGCGGCggCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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