miRNA display CGI


Results 41 - 60 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 132156 0.66 0.58779
Target:  5'- uCGaGCGCGCcgcCGCuGCAGGcaGCGCGGGc -3'
miRNA:   3'- -GCcCGCGCGu--GCG-CGUCCa-CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 134237 0.66 0.58779
Target:  5'- uCGGcGUgGCGCACGCGCcc-UGCGCGGc -3'
miRNA:   3'- -GCC-CG-CGCGUGCGCGuccACGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 59037 0.66 0.591714
Target:  5'- aCGGGUGCcgccgcgcgagcucaGCGCGCGCGGccGCG-GAGa -3'
miRNA:   3'- -GCCCGCG---------------CGUGCGCGUCcaCGUgCUC- -5'
23740 3' -62.2 NC_005261.1 + 118827 0.66 0.604496
Target:  5'- uGGGCGCgGCacugccgcucugcgGCGCGgAGGgcgGCGCGc- -3'
miRNA:   3'- gCCCGCG-CG--------------UGCGCgUCCa--CGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 114218 0.66 0.627181
Target:  5'- uCGaGGUgGUGCACuCGCGGGUGUACa-- -3'
miRNA:   3'- -GC-CCG-CGCGUGcGCGUCCACGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 88149 0.66 0.617311
Target:  5'- gCGGGgGCGCcccggcCGCGCAGccggGC-CGGGg -3'
miRNA:   3'- -GCCCgCGCGu-----GCGCGUCca--CGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 134999 0.66 0.58779
Target:  5'- gGGGCGCcccugGCGCG-GCGGGcccGCACGcGg -3'
miRNA:   3'- gCCCGCG-----CGUGCgCGUCCa--CGUGCuC- -5'
23740 3' -62.2 NC_005261.1 + 38506 0.66 0.617311
Target:  5'- uGGaGCGUcguauaagGCGCGCGCuGGcUGCGCGc- -3'
miRNA:   3'- gCC-CGCG--------CGUGCGCGuCC-ACGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 64117 0.66 0.617311
Target:  5'- aCGGGCG-GCACGUGCc---GCGCGGc -3'
miRNA:   3'- -GCCCGCgCGUGCGCGuccaCGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 107036 0.66 0.637055
Target:  5'- aGGGCGCGcCACGCGCcGcGUaCACc-- -3'
miRNA:   3'- gCCCGCGC-GUGCGCGuC-CAcGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 132898 0.66 0.597608
Target:  5'- cCGGGCGC-CGCGgGC-GGcGC-CGAGc -3'
miRNA:   3'- -GCCCGCGcGUGCgCGuCCaCGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 40727 0.66 0.58779
Target:  5'- gGGGCGCGUggGCGUAGcccaucagcGUGUAUGuGu -3'
miRNA:   3'- gCCCGCGCGugCGCGUC---------CACGUGCuC- -5'
23740 3' -62.2 NC_005261.1 + 124783 0.66 0.606466
Target:  5'- gCGGGgGCccuuccgacagccGCucguCGCGCucuAGGUGCGCGuAGg -3'
miRNA:   3'- -GCCCgCG-------------CGu---GCGCG---UCCACGUGC-UC- -5'
23740 3' -62.2 NC_005261.1 + 76079 0.66 0.597608
Target:  5'- gCGGGCuGCuGCGCcucgugGCGCuGGaGCugGAGa -3'
miRNA:   3'- -GCCCG-CG-CGUG------CGCGuCCaCGugCUC- -5'
23740 3' -62.2 NC_005261.1 + 18592 0.66 0.607451
Target:  5'- aGGGCGCaGC-CGUGCgAGGUGUcCGu- -3'
miRNA:   3'- gCCCGCG-CGuGCGCG-UCCACGuGCuc -5'
23740 3' -62.2 NC_005261.1 + 100242 0.66 0.58681
Target:  5'- cCGGGCGCacgucuGCcagcccccagucgGCGCGCcGGUggcGCACGAa -3'
miRNA:   3'- -GCCCGCG------CG-------------UGCGCGuCCA---CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 54894 0.67 0.578001
Target:  5'- -cGGCGCGCGCGUGCcGcaGCGCGc- -3'
miRNA:   3'- gcCCGCGCGUGCGCGuCcaCGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 82172 0.67 0.529709
Target:  5'- gCGcGGCGCGgAagGCGCGGcGUGCGCa-- -3'
miRNA:   3'- -GC-CCGCGCgUg-CGCGUC-CACGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 45663 0.67 0.529709
Target:  5'- gCGGGCGUGaucaACGCGCgccccGGGcUGCugaACGGGc -3'
miRNA:   3'- -GCCCGCGCg---UGCGCG-----UCC-ACG---UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 127657 0.67 0.529709
Target:  5'- gGGGCGCGCGgGUuCGGG-GCGgGAc -3'
miRNA:   3'- gCCCGCGCGUgCGcGUCCaCGUgCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.