miRNA display CGI


Results 61 - 80 of 305 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 44224 0.67 0.533523
Target:  5'- gGGaGCGCGCgcugcuggccgcccaGCGCGCGgccgacgccgcGGcGCGCGGGg -3'
miRNA:   3'- gCC-CGCGCG---------------UGCGCGU-----------CCaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 53465 0.67 0.529709
Target:  5'- cCGGGCGgG-ACGCaGCAGGcGCGCa-- -3'
miRNA:   3'- -GCCCGCgCgUGCG-CGUCCaCGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 63354 0.67 0.539262
Target:  5'- aCGGGUucacggugGCGCG-GUGCGGGUGUGcCGGGu -3'
miRNA:   3'- -GCCCG--------CGCGUgCGCGUCCACGU-GCUC- -5'
23740 3' -62.2 NC_005261.1 + 20443 0.67 0.548873
Target:  5'- gGGGaGCGCAgacgugccCGCGCGGGUGUggcgcuuccuuGCGGa -3'
miRNA:   3'- gCCCgCGCGU--------GCGCGUCCACG-----------UGCUc -5'
23740 3' -62.2 NC_005261.1 + 105546 0.67 0.539262
Target:  5'- uCGGGCuggccGCaCGCGCGCAGGgccagGUACGc- -3'
miRNA:   3'- -GCCCG-----CGcGUGCGCGUCCa----CGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 63782 0.67 0.548873
Target:  5'- aGGuccaCGUGCGCGCGCGGcUGCGUGAGc -3'
miRNA:   3'- gCCc---GCGCGUGCGCGUCcACGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 13413 0.67 0.539262
Target:  5'- aGGGCGaCGCgaaggcgcaccGCGCGUcgaccGGGUGCAgGcAGg -3'
miRNA:   3'- gCCCGC-GCG-----------UGCGCG-----UCCACGUgC-UC- -5'
23740 3' -62.2 NC_005261.1 + 54126 0.67 0.536389
Target:  5'- gCGGGCucgucccacggcacGcCGCACGCGgccGUGCGCGGGg -3'
miRNA:   3'- -GCCCG--------------C-GCGUGCGCgucCACGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 135746 0.67 0.548873
Target:  5'- -uGGCGCGCcucagcCGCGC-GGUGCGCu-- -3'
miRNA:   3'- gcCCGCGCGu-----GCGCGuCCACGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 45995 0.67 0.539262
Target:  5'- aCGGGCGCcauguGUGCGCgGCAGGcgaUGUcCGGGa -3'
miRNA:   3'- -GCCCGCG-----CGUGCG-CGUCC---ACGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 135254 0.67 0.552732
Target:  5'- gCGGGCGCGCggauggacaucAUGCggccugugcagaacgGCGGGUuccGCGCGAc -3'
miRNA:   3'- -GCCCGCGCG-----------UGCG---------------CGUCCA---CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 110662 0.67 0.548873
Target:  5'- uGGuuuuCGUGUACGCGCAgcgccuGGaGCACGAGg -3'
miRNA:   3'- gCCc---GCGCGUGCGCGU------CCaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 136915 0.67 0.548873
Target:  5'- uGGGCcgcgcggccgcgGCGCAUGUGguGGUaCAUGGGc -3'
miRNA:   3'- gCCCG------------CGCGUGCGCguCCAcGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 57957 0.67 0.547909
Target:  5'- cCGuGUGCGCACGCcggcgacGCAGGcGCGCGcGg -3'
miRNA:   3'- -GCcCGCGCGUGCG-------CGUCCaCGUGCuC- -5'
23740 3' -62.2 NC_005261.1 + 46451 0.67 0.546946
Target:  5'- aCGGcGUGCGUGaacaggcccucgaaGCGCAGGUGCagcucggcgcccuccGCGGGg -3'
miRNA:   3'- -GCC-CGCGCGUg-------------CGCGUCCACG---------------UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 73658 0.67 0.548873
Target:  5'- aGGuagaCGCGCACGaCGCggAGGgcggGCGCGGGc -3'
miRNA:   3'- gCCc---GCGCGUGC-GCG--UCCa---CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 118378 0.67 0.548873
Target:  5'- gGGGCGCGCggcccgAgGCGCuGGcgGcCGCGGGc -3'
miRNA:   3'- gCCCGCGCG------UgCGCGuCCa-C-GUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 98332 0.67 0.548873
Target:  5'- gGcGGCGCGCcccgugucgACGCggggGCGGGgguggGCGCGGGc -3'
miRNA:   3'- gC-CCGCGCG---------UGCG----CGUCCa----CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 45469 0.67 0.545984
Target:  5'- uGGGCGC-CACGCGCGuGcugaacacggccauGUGCAUGGc -3'
miRNA:   3'- gCCCGCGcGUGCGCGU-C--------------CACGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 101104 0.67 0.548873
Target:  5'- gCGGccGCGCGCGCcuugGCGCccucguGGUccucGCGCGAGg -3'
miRNA:   3'- -GCC--CGCGCGUG----CGCGu-----CCA----CGUGCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.