miRNA display CGI


Results 81 - 100 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 53465 0.67 0.529709
Target:  5'- cCGGGCGgG-ACGCaGCAGGcGCGCa-- -3'
miRNA:   3'- -GCCCGCgCgUGCG-CGUCCaCGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 63782 0.67 0.548873
Target:  5'- aGGuccaCGUGCGCGCGCGGcUGCGUGAGc -3'
miRNA:   3'- gCCc---GCGCGUGCGCGUCcACGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 105546 0.67 0.539262
Target:  5'- uCGGGCuggccGCaCGCGCGCAGGgccagGUACGc- -3'
miRNA:   3'- -GCCCG-----CGcGUGCGCGUCCa----CGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 120325 0.67 0.530661
Target:  5'- gCGaGGCGCGCugcguccccgaGCGCGUcucccugcgcuggacGGUGCGCGAc -3'
miRNA:   3'- -GC-CCGCGCG-----------UGCGCGu--------------CCACGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 121793 0.67 0.568248
Target:  5'- -cGGCGgGCugG-GCAGGggGCGCGuGg -3'
miRNA:   3'- gcCCGCgCGugCgCGUCCa-CGUGCuC- -5'
23740 3' -62.2 NC_005261.1 + 9619 0.67 0.568248
Target:  5'- gGGGUGgGCAgGCGggggugggggcUGGGUGgGCGGGg -3'
miRNA:   3'- gCCCGCgCGUgCGC-----------GUCCACgUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 133128 0.67 0.578001
Target:  5'- -cGGCGUGCGCGUcucccuGC-GGUGCGCGc- -3'
miRNA:   3'- gcCCGCGCGUGCG------CGuCCACGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 136456 0.67 0.581913
Target:  5'- gGGGCaCGCggcagccccagacucGCGCGCGGGcaGCAgCGAGc -3'
miRNA:   3'- gCCCGcGCG---------------UGCGCGUCCa-CGU-GCUC- -5'
23740 3' -62.2 NC_005261.1 + 106975 0.67 0.558537
Target:  5'- uCGGcGCGCGCGcCGCGCaccgcgucggccAGGUccGC-CGAGc -3'
miRNA:   3'- -GCC-CGCGCGU-GCGCG------------UCCA--CGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 105777 0.67 0.575071
Target:  5'- aGGGCGCGCuccccggcgGCGUGUAGaagccgcacuccccGUacacGCGCGAGa -3'
miRNA:   3'- gCCCGCGCG---------UGCGCGUC--------------CA----CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 118549 0.67 0.572144
Target:  5'- gCGGcGCGCGCgaggacgccgugcccGCGCGCGcGGcgGCGCGc- -3'
miRNA:   3'- -GCC-CGCGCG---------------UGCGCGU-CCa-CGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 108046 0.67 0.56533
Target:  5'- aCGGGUGCagguuugcgaugguGguCGUGUA-GUGCGCGAGg -3'
miRNA:   3'- -GCCCGCG--------------CguGCGCGUcCACGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 10021 0.67 0.558537
Target:  5'- cCGGGCGgGCcuCGCGuCGGGgGCGCu-- -3'
miRNA:   3'- -GCCCGCgCGu-GCGC-GUCCaCGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 23206 0.67 0.558537
Target:  5'- gGGGCcCGCagcggcggccGCGCGCAaaagccGGUGCAgCGGGc -3'
miRNA:   3'- gCCCGcGCG----------UGCGCGU------CCACGU-GCUC- -5'
23740 3' -62.2 NC_005261.1 + 5285 0.67 0.558537
Target:  5'- cCGGcCGCgGUGCGCGCGGGUccCugGAGa -3'
miRNA:   3'- -GCCcGCG-CGUGCGCGUCCAc-GugCUC- -5'
23740 3' -62.2 NC_005261.1 + 98332 0.67 0.548873
Target:  5'- gGcGGCGCGCcccgugucgACGCggggGCGGGgguggGCGCGGGc -3'
miRNA:   3'- gC-CCGCGCG---------UGCG----CGUCCa----CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 136915 0.67 0.548873
Target:  5'- uGGGCcgcgcggccgcgGCGCAUGUGguGGUaCAUGGGc -3'
miRNA:   3'- gCCCG------------CGCGUGCGCguCCAcGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 13044 0.67 0.558537
Target:  5'- aGGGCGCGgggcCGCGCGCGccccugccGG-GCGCGu- -3'
miRNA:   3'- gCCCGCGC----GUGCGCGU--------CCaCGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 15509 0.67 0.558537
Target:  5'- gGGGCGUGUgucgGCGUGCAG--GCAgGAGc -3'
miRNA:   3'- gCCCGCGCG----UGCGCGUCcaCGUgCUC- -5'
23740 3' -62.2 NC_005261.1 + 135254 0.67 0.552732
Target:  5'- gCGGGCGCGCggauggacaucAUGCggccugugcagaacgGCGGGUuccGCGCGAc -3'
miRNA:   3'- -GCCCGCGCG-----------UGCG---------------CGUCCA---CGUGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.