miRNA display CGI


Results 101 - 120 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 105777 0.67 0.575071
Target:  5'- aGGGCGCGCuccccggcgGCGUGUAGaagccgcacuccccGUacacGCGCGAGa -3'
miRNA:   3'- gCCCGCGCG---------UGCGCGUC--------------CA----CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 127657 0.67 0.529709
Target:  5'- gGGGCGCGCGgGUuCGGG-GCGgGAc -3'
miRNA:   3'- gCCCGCGCGUgCGcGUCCaCGUgCUc -5'
23740 3' -62.2 NC_005261.1 + 53465 0.67 0.529709
Target:  5'- cCGGGCGgG-ACGCaGCAGGcGCGCa-- -3'
miRNA:   3'- -GCCCGCgCgUGCG-CGUCCaCGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 120325 0.67 0.530661
Target:  5'- gCGaGGCGCGCugcguccccgaGCGCGUcucccugcgcuggacGGUGCGCGAc -3'
miRNA:   3'- -GC-CCGCGCG-----------UGCGCGu--------------CCACGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 44224 0.67 0.533523
Target:  5'- gGGaGCGCGCgcugcuggccgcccaGCGCGCGgccgacgccgcGGcGCGCGGGg -3'
miRNA:   3'- gCC-CGCGCG---------------UGCGCGU-----------CCaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 54126 0.67 0.536389
Target:  5'- gCGGGCucgucccacggcacGcCGCACGCGgccGUGCGCGGGg -3'
miRNA:   3'- -GCCCG--------------C-GCGUGCGCgucCACGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 13413 0.67 0.539262
Target:  5'- aGGGCGaCGCgaaggcgcaccGCGCGUcgaccGGGUGCAgGcAGg -3'
miRNA:   3'- gCCCGC-GCG-----------UGCGCG-----UCCACGUgC-UC- -5'
23740 3' -62.2 NC_005261.1 + 63354 0.67 0.539262
Target:  5'- aCGGGUucacggugGCGCG-GUGCGGGUGUGcCGGGu -3'
miRNA:   3'- -GCCCG--------CGCGUgCGCGUCCACGU-GCUC- -5'
23740 3' -62.2 NC_005261.1 + 105546 0.67 0.539262
Target:  5'- uCGGGCuggccGCaCGCGCGCAGGgccagGUACGc- -3'
miRNA:   3'- -GCCCG-----CGcGUGCGCGUCCa----CGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 82172 0.67 0.529709
Target:  5'- gCGcGGCGCGgAagGCGCGGcGUGCGCa-- -3'
miRNA:   3'- -GC-CCGCGCgUg-CGCGUC-CACGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 45663 0.67 0.529709
Target:  5'- gCGGGCGUGaucaACGCGCgccccGGGcUGCugaACGGGc -3'
miRNA:   3'- -GCCCGCGCg---UGCGCG-----UCC-ACG---UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 33833 0.67 0.529709
Target:  5'- gGGGCGCGggccccCugGCGCuGGgcggGC-CGGGa -3'
miRNA:   3'- gCCCGCGC------GugCGCGuCCa---CGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 21817 0.67 0.529709
Target:  5'- cCGGGCccgcggcggGCGCGCGUGCGGGcggGCuCGc- -3'
miRNA:   3'- -GCCCG---------CGCGUGCGCGUCCa--CGuGCuc -5'
23740 3' -62.2 NC_005261.1 + 31982 0.67 0.529709
Target:  5'- uGGGCccGCGCAC-CGC-GGUGCccgugccgccgcGCGAGu -3'
miRNA:   3'- gCCCG--CGCGUGcGCGuCCACG------------UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 5736 0.67 0.529709
Target:  5'- gCGGGagaaGCGCGCGCGgaAGGUGa--GGGu -3'
miRNA:   3'- -GCCCg---CGCGUGCGCg-UCCACgugCUC- -5'
23740 3' -62.2 NC_005261.1 + 97026 0.67 0.528757
Target:  5'- uCGGGCGCGCccggcCGCccacauccacaggGCGGGgggcggcggGCACGAu -3'
miRNA:   3'- -GCCCGCGCGu----GCG-------------CGUCCa--------CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 32048 0.68 0.520218
Target:  5'- aCGGGCGCaaggacaugGC-CGCGCAGa-GCGCGGc -3'
miRNA:   3'- -GCCCGCG---------CGuGCGCGUCcaCGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 120939 0.68 0.489402
Target:  5'- cCGGGCGCGggaagguggaggcuCGCGCcccGCGGG-GCGCGuGc -3'
miRNA:   3'- -GCCCGCGC--------------GUGCG---CGUCCaCGUGCuC- -5'
23740 3' -62.2 NC_005261.1 + 106123 0.68 0.482973
Target:  5'- -cGGCGCGCGCGCGCcGGcaacGC-CGGa -3'
miRNA:   3'- gcCCGCGCGUGCGCGuCCa---CGuGCUc -5'
23740 3' -62.2 NC_005261.1 + 51210 0.68 0.482973
Target:  5'- cCGGGCGCGC-UGCuGCuGG-GCGCGc- -3'
miRNA:   3'- -GCCCGCGCGuGCG-CGuCCaCGUGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.