Results 41 - 60 of 305 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23740 | 3' | -62.2 | NC_005261.1 | + | 137753 | 0.74 | 0.21171 |
Target: 5'- uCGGcGCGCGCGgGgGCGGG-GUGCGGGg -3' miRNA: 3'- -GCC-CGCGCGUgCgCGUCCaCGUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 138193 | 0.74 | 0.21171 |
Target: 5'- aGGGCGCGgGCGgGCGGGggGCAgGGc -3' miRNA: 3'- gCCCGCGCgUGCgCGUCCa-CGUgCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 118684 | 0.74 | 0.215258 |
Target: 5'- gCGGGCgcugGCGCACGCGCGGcGUGguccugcucagcguCGCGGGc -3' miRNA: 3'- -GCCCG----CGCGUGCGCGUC-CAC--------------GUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 95671 | 0.74 | 0.216794 |
Target: 5'- aCGGGCGCgggugugaGCACGUGCAcGaGCGCGAGu -3' miRNA: 3'- -GCCCGCG--------CGUGCGCGUcCaCGUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 67061 | 0.73 | 0.26738 |
Target: 5'- -aGGCGgGCGCGCGCGGGgGCucgcuCGGGc -3' miRNA: 3'- gcCCGCgCGUGCGCGUCCaCGu----GCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 129350 | 0.73 | 0.26738 |
Target: 5'- gCGGuaGCGCccccuuccGCGCGCGGGUcGCGCGGc -3' miRNA: 3'- -GCCcgCGCG--------UGCGCGUCCA-CGUGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 70581 | 0.73 | 0.261318 |
Target: 5'- uCGGGCGCGaGCGCaGCGGcGUGCGCc-- -3' miRNA: 3'- -GCCCGCGCgUGCG-CGUC-CACGUGcuc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 29897 | 0.73 | 0.261318 |
Target: 5'- cCGGGCccgcggcaGCGCGCGaGCGGcUGCGCGAGc -3' miRNA: 3'- -GCCCG--------CGCGUGCgCGUCcACGUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 77663 | 0.73 | 0.261318 |
Target: 5'- -cGGCGCcuGCAgGCGCAGG-GCGCGGa -3' miRNA: 3'- gcCCGCG--CGUgCGCGUCCaCGUGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 133542 | 0.73 | 0.261318 |
Target: 5'- gGGGCGCGCA-GCGCAGcaugcUGCuCGGGg -3' miRNA: 3'- gCCCGCGCGUgCGCGUCc----ACGuGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 74951 | 0.73 | 0.249532 |
Target: 5'- gCGGGCGCGCucgGCGCGCucgAGGccGCGCGc- -3' miRNA: 3'- -GCCCGCGCG---UGCGCG---UCCa-CGUGCuc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 32912 | 0.73 | 0.243805 |
Target: 5'- gGGGCGCGCguggggggcgGCGgGCGGGggggGgGCGGGg -3' miRNA: 3'- gCCCGCGCG----------UGCgCGUCCa---CgUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 93759 | 0.73 | 0.238187 |
Target: 5'- gCGGcccGCGCGCGCGCggcgucgcaGCAGGUGCcccCGGGa -3' miRNA: 3'- -GCC---CGCGCGUGCG---------CGUCCACGu--GCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 57786 | 0.72 | 0.279843 |
Target: 5'- cCGcGGCGuCGCGCG-GCGGGcGCGCGAa -3' miRNA: 3'- -GC-CCGC-GCGUGCgCGUCCaCGUGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 60001 | 0.72 | 0.279843 |
Target: 5'- uCGGGCaGCGCgACGgGCAGG-GaCACGAa -3' miRNA: 3'- -GCCCG-CGCG-UGCgCGUCCaC-GUGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 105866 | 0.72 | 0.279843 |
Target: 5'- uCGGcGaUGCGguUGgGCAGGUGCACGAu -3' miRNA: 3'- -GCC-C-GCGCguGCgCGUCCACGUGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 46794 | 0.72 | 0.273554 |
Target: 5'- cCGGGCGCccgucgcgGCGCGCGCGGaugGCGCGc- -3' miRNA: 3'- -GCCCGCG--------CGUGCGCGUCca-CGUGCuc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 126949 | 0.72 | 0.273554 |
Target: 5'- gGGGCGC-CGgGCGCGGGggcggcaGCGCGAa -3' miRNA: 3'- gCCCGCGcGUgCGCGUCCa------CGUGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 12311 | 0.72 | 0.273554 |
Target: 5'- aCGGGCGCGUagccggcgggcGCGCGCuuGGccgGCGCGGc -3' miRNA: 3'- -GCCCGCGCG-----------UGCGCGu-CCa--CGUGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 132622 | 0.72 | 0.286245 |
Target: 5'- aGGGgGCGCugGCGCcgAGGacgcggGCGCGGc -3' miRNA: 3'- gCCCgCGCGugCGCG--UCCa-----CGUGCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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