miRNA display CGI


Results 61 - 80 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 70480 0.72 0.313009
Target:  5'- gCGGGUGCGCGCGCGUGa--GCACGuAGc -3'
miRNA:   3'- -GCCCGCGCGUGCGCGUccaCGUGC-UC- -5'
23740 3' -62.2 NC_005261.1 + 30378 0.72 0.313009
Target:  5'- cCGGGCGC-CGCgGCGCGGGUGgAgGuGg -3'
miRNA:   3'- -GCCCGCGcGUG-CGCGUCCACgUgCuC- -5'
23740 3' -62.2 NC_005261.1 + 21036 0.72 0.315788
Target:  5'- gGGGCGCGCAcCGUGCGccauccuuuaaaggcGGcGCACGGu -3'
miRNA:   3'- gCCCGCGCGU-GCGCGU---------------CCaCGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 31577 0.72 0.292763
Target:  5'- aCGGGCGCGCcggacgugaGCGCGCucGGcGCGCaGGGc -3'
miRNA:   3'- -GCCCGCGCG---------UGCGCGu-CCaCGUG-CUC- -5'
23740 3' -62.2 NC_005261.1 + 4504 0.72 0.292763
Target:  5'- gCGGGCcccagucgcGCGCcCGCGCGGGcGCcgcgGCGAGg -3'
miRNA:   3'- -GCCCG---------CGCGuGCGCGUCCaCG----UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 123170 0.72 0.273554
Target:  5'- gCGGGCGCGCGgGCGU-GGUGgCugGuGu -3'
miRNA:   3'- -GCCCGCGCGUgCGCGuCCAC-GugCuC- -5'
23740 3' -62.2 NC_005261.1 + 12311 0.72 0.273554
Target:  5'- aCGGGCGCGUagccggcgggcGCGCGCuuGGccgGCGCGGc -3'
miRNA:   3'- -GCCCGCGCG-----------UGCGCGu-CCa--CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 126949 0.72 0.273554
Target:  5'- gGGGCGC-CGgGCGCGGGggcggcaGCGCGAa -3'
miRNA:   3'- gCCCGCGcGUgCGCGUCCa------CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 46794 0.72 0.273554
Target:  5'- cCGGGCGCccgucgcgGCGCGCGCGGaugGCGCGc- -3'
miRNA:   3'- -GCCCGCG--------CGUGCGCGUCca-CGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 105866 0.72 0.279843
Target:  5'- uCGGcGaUGCGguUGgGCAGGUGCACGAu -3'
miRNA:   3'- -GCC-C-GCGCguGCgCGUCCACGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 60001 0.72 0.279843
Target:  5'- uCGGGCaGCGCgACGgGCAGG-GaCACGAa -3'
miRNA:   3'- -GCCCG-CGCG-UGCgCGUCCaC-GUGCUc -5'
23740 3' -62.2 NC_005261.1 + 57786 0.72 0.279843
Target:  5'- cCGcGGCGuCGCGCG-GCGGGcGCGCGAa -3'
miRNA:   3'- -GC-CCGC-GCGUGCgCGUCCaCGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 132622 0.72 0.286245
Target:  5'- aGGGgGCGCugGCGCcgAGGacgcggGCGCGGc -3'
miRNA:   3'- gCCCgCGCGugCGCG--UCCa-----CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 19253 0.72 0.286245
Target:  5'- gGGGCGCugaacaGCGCGCGCGGGUaCGCcAGc -3'
miRNA:   3'- gCCCGCG------CGUGCGCGUCCAcGUGcUC- -5'
23740 3' -62.2 NC_005261.1 + 72615 0.72 0.290796
Target:  5'- cCGGGCGgGCGgGCGCAGGgGCGgcuuuauaguccccUGGGg -3'
miRNA:   3'- -GCCCGCgCGUgCGCGUCCaCGU--------------GCUC- -5'
23740 3' -62.2 NC_005261.1 + 83679 0.71 0.327087
Target:  5'- uGGGCGCGCAgCGCGCcgccgAGGcgGCGCc-- -3'
miRNA:   3'- gCCCGCGCGU-GCGCG-----UCCa-CGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 75488 0.71 0.327087
Target:  5'- gCGGGC-CGCuacgaGCGCGGGgcGCugGAGg -3'
miRNA:   3'- -GCCCGcGCGug---CGCGUCCa-CGugCUC- -5'
23740 3' -62.2 NC_005261.1 + 31825 0.71 0.327087
Target:  5'- gCGGcGCGCGCugGCGCGcgccGUGCugGc- -3'
miRNA:   3'- -GCC-CGCGCGugCGCGUc---CACGugCuc -5'
23740 3' -62.2 NC_005261.1 + 11471 0.71 0.327087
Target:  5'- gCGGGCGCGgAgGgGCGGG-GCGgGGGu -3'
miRNA:   3'- -GCCCGCGCgUgCgCGUCCaCGUgCUC- -5'
23740 3' -62.2 NC_005261.1 + 32186 0.71 0.334299
Target:  5'- gCGGGCG-GCGCGCGCuGGaGCugGc- -3'
miRNA:   3'- -GCCCGCgCGUGCGCGuCCaCGugCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.