miRNA display CGI


Results 101 - 120 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 100609 0.7 0.40767
Target:  5'- gCGGcCGCGCAgGUGCAGGUcccgcucgcacaggcGCGCGGc -3'
miRNA:   3'- -GCCcGCGCGUgCGCGUCCA---------------CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 107608 0.7 0.396119
Target:  5'- aCGGcaGCGgGCACaGCGUccGUGCGCGGGa -3'
miRNA:   3'- -GCC--CGCgCGUG-CGCGucCACGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 44319 0.7 0.396119
Target:  5'- gCGGGCGcCGCAgaCGgGGGgcugggGCACGAGg -3'
miRNA:   3'- -GCCCGC-GCGUgcGCgUCCa-----CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 50023 0.7 0.387998
Target:  5'- gCGGGCGCccagccGC-CGCGCGacGGUGCagcgccgccGCGAGa -3'
miRNA:   3'- -GCCCGCG------CGuGCGCGU--CCACG---------UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 73211 0.7 0.364303
Target:  5'- cCGGGCGCcucgagGgGCGCGguGGccgcgaGCGCGAGc -3'
miRNA:   3'- -GCCCGCG------CgUGCGCguCCa-----CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 133030 0.7 0.367404
Target:  5'- gCGGGCGCGCcacCGCGCAcgcacGUGCugcgcggcguuggcgGCGAGu -3'
miRNA:   3'- -GCCCGCGCGu--GCGCGUc----CACG---------------UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 44985 0.7 0.372089
Target:  5'- cCGGGCGgGC-CGCcaCAGGUGCuCGAu -3'
miRNA:   3'- -GCCCGCgCGuGCGc-GUCCACGuGCUc -5'
23740 3' -62.2 NC_005261.1 + 14777 0.7 0.372089
Target:  5'- gGGGC-CGCccCGCGCAGGUGC-CGc- -3'
miRNA:   3'- gCCCGcGCGu-GCGCGUCCACGuGCuc -5'
23740 3' -62.2 NC_005261.1 + 34468 0.7 0.379988
Target:  5'- cCGGGgGCcccGUACcuGCgGCGGGUGCugGAGu -3'
miRNA:   3'- -GCCCgCG---CGUG--CG-CGUCCACGugCUC- -5'
23740 3' -62.2 NC_005261.1 + 58703 0.7 0.379988
Target:  5'- aGGGCGCGC-CGCuGagAGGUGCGCc-- -3'
miRNA:   3'- gCCCGCGCGuGCG-Cg-UCCACGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 3544 0.69 0.421126
Target:  5'- -cGGCGCGCA-GCGCGGcGgGCGCGGc -3'
miRNA:   3'- gcCCGCGCGUgCGCGUC-CaCGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 35464 0.69 0.421126
Target:  5'- gCGcGGCGCGCGCGCGUcccgGGGUcccuGcCGCGGc -3'
miRNA:   3'- -GC-CCGCGCGUGCGCG----UCCA----C-GUGCUc -5'
23740 3' -62.2 NC_005261.1 + 98497 0.69 0.420277
Target:  5'- uCGGGCggguaaggugccgGCGUACGgGCAG--GCGCGAGa -3'
miRNA:   3'- -GCCCG-------------CGCGUGCgCGUCcaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 69969 0.69 0.412684
Target:  5'- cCGGGCGCGCGCuagaaCGCcGGgacgGC-CGAGu -3'
miRNA:   3'- -GCCCGCGCGUGc----GCGuCCa---CGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 109199 0.69 0.412684
Target:  5'- uCGGGCGUGCGCagGCGCucGUagGCGCGGc -3'
miRNA:   3'- -GCCCGCGCGUG--CGCGucCA--CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 83505 0.69 0.412684
Target:  5'- -aGGCGCGCGCGcCGguGGaagcgGCACGc- -3'
miRNA:   3'- gcCCGCGCGUGC-GCguCCa----CGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 11846 0.69 0.412684
Target:  5'- gCGGGCGCGCGuuCGCGa----GCGCGAGc -3'
miRNA:   3'- -GCCCGCGCGU--GCGCguccaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 104726 0.69 0.412684
Target:  5'- aGGGCGCGU-CGUGCcGcGUGCGCGc- -3'
miRNA:   3'- gCCCGCGCGuGCGCGuC-CACGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 98009 0.69 0.412684
Target:  5'- gCGGGgGCGCugGCGgCGaG-GCugGAGa -3'
miRNA:   3'- -GCCCgCGCGugCGC-GUcCaCGugCUC- -5'
23740 3' -62.2 NC_005261.1 + 48337 0.69 0.421126
Target:  5'- gGGGCGCGCGCG-GCGaG-GC-CGAGg -3'
miRNA:   3'- gCCCGCGCGUGCgCGUcCaCGuGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.