miRNA display CGI


Results 121 - 140 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 93479 0.69 0.447062
Target:  5'- gGGGCGCGCGuCGCccGCGGcGaagcGCGCGAa -3'
miRNA:   3'- gCCCGCGCGU-GCG--CGUC-Ca---CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 83383 0.69 0.45324
Target:  5'- gCGcGGCGaGCGCgGCcucggccgaggcgaGCAGGUGCGCGAa -3'
miRNA:   3'- -GC-CCGCgCGUG-CG--------------CGUCCACGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 99341 0.69 0.455903
Target:  5'- -cGGCGCGCccagcagcaGCGCGCAcGUG-ACGAGg -3'
miRNA:   3'- gcCCGCGCG---------UGCGCGUcCACgUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 64813 0.69 0.429671
Target:  5'- aCGcGCGCGCGCGCGCcgcgcgccGGGUccGCGCGc- -3'
miRNA:   3'- -GCcCGCGCGUGCGCG--------UCCA--CGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 1940 0.69 0.429671
Target:  5'- gCGGGCagcacCGCgGCGCGCAGGUaCACGuGc -3'
miRNA:   3'- -GCCCGc----GCG-UGCGCGUCCAcGUGCuC- -5'
23740 3' -62.2 NC_005261.1 + 48120 0.69 0.424531
Target:  5'- aCGGGCaugGCGCGCGCGggaaagaggggggaGGGUG-GCGAGa -3'
miRNA:   3'- -GCCCG---CGCGUGCGCg-------------UCCACgUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 38277 0.69 0.412684
Target:  5'- gGGGCG-GCugGUGCAcgcGGUGCugGc- -3'
miRNA:   3'- gCCCGCgCGugCGCGU---CCACGugCuc -5'
23740 3' -62.2 NC_005261.1 + 98009 0.69 0.412684
Target:  5'- gCGGGgGCGCugGCGgCGaG-GCugGAGa -3'
miRNA:   3'- -GCCCgCGCGugCGC-GUcCaCGugCUC- -5'
23740 3' -62.2 NC_005261.1 + 104726 0.69 0.412684
Target:  5'- aGGGCGCGU-CGUGCcGcGUGCGCGc- -3'
miRNA:   3'- gCCCGCGCGuGCGCGuC-CACGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 11846 0.69 0.412684
Target:  5'- gCGGGCGCGCGuuCGCGa----GCGCGAGc -3'
miRNA:   3'- -GCCCGCGCGU--GCGCguccaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 83505 0.69 0.412684
Target:  5'- -aGGCGCGCGCGcCGguGGaagcgGCACGc- -3'
miRNA:   3'- gcCCGCGCGUGC-GCguCCa----CGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 109199 0.69 0.412684
Target:  5'- uCGGGCGUGCGCagGCGCucGUagGCGCGGc -3'
miRNA:   3'- -GCCCGCGCGUG--CGCGucCA--CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 69969 0.69 0.412684
Target:  5'- cCGGGCGCGCGCuagaaCGCcGGgacgGC-CGAGu -3'
miRNA:   3'- -GCCCGCGCGUGc----GCGuCCa---CGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 98497 0.69 0.420277
Target:  5'- uCGGGCggguaaggugccgGCGUACGgGCAG--GCGCGAGa -3'
miRNA:   3'- -GCCCG-------------CGCGUGCgCGUCcaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 35464 0.69 0.421126
Target:  5'- gCGcGGCGCGCGCGCGUcccgGGGUcccuGcCGCGGc -3'
miRNA:   3'- -GC-CCGCGCGUGCGCG----UCCA----C-GUGCUc -5'
23740 3' -62.2 NC_005261.1 + 3544 0.69 0.421126
Target:  5'- -cGGCGCGCA-GCGCGGcGgGCGCGGc -3'
miRNA:   3'- gcCCGCGCGUgCGCGUC-CaCGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 48337 0.69 0.421126
Target:  5'- gGGGCGCGCGCG-GCGaG-GC-CGAGg -3'
miRNA:   3'- gCCCGCGCGUGCgCGUcCaCGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 103286 0.69 0.421126
Target:  5'- cCGGGUGC-CGCGCGCAGcccCGCGAa -3'
miRNA:   3'- -GCCCGCGcGUGCGCGUCcacGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 29769 0.69 0.422827
Target:  5'- gCGGcGCGCGUACGCGCccauggccuacccggAGGccggcgccggcgGCGCGGGc -3'
miRNA:   3'- -GCC-CGCGCGUGCGCG---------------UCCa-----------CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 57845 0.68 0.462147
Target:  5'- gCGGGCGCGgGCggcaaggccucgGCGCucGGGUcgggaagucggccgGCACGGGg -3'
miRNA:   3'- -GCCCGCGCgUG------------CGCG--UCCA--------------CGUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.