miRNA display CGI


Results 41 - 60 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 1720 0.74 0.232679
Target:  5'- gCGcGGCG-GCACGgGCAccgcGGUGCGCGGGc -3'
miRNA:   3'- -GC-CCGCgCGUGCgCGU----CCACGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 38345 0.74 0.232679
Target:  5'- gGGGCGCGCACGCccaGCGGGccuuugggGCGgcCGGGa -3'
miRNA:   3'- gCCCGCGCGUGCG---CGUCCa-------CGU--GCUC- -5'
23740 3' -62.2 NC_005261.1 + 67111 0.74 0.232679
Target:  5'- gCGGGCG-GCGCGCGCA-GUGCgGCGGc -3'
miRNA:   3'- -GCCCGCgCGUGCGCGUcCACG-UGCUc -5'
23740 3' -62.2 NC_005261.1 + 97634 0.74 0.232679
Target:  5'- gCGGGCGgaGCGgGCGCGGGUGC-CGc- -3'
miRNA:   3'- -GCCCGCg-CGUgCGCGUCCACGuGCuc -5'
23740 3' -62.2 NC_005261.1 + 93759 0.73 0.238187
Target:  5'- gCGGcccGCGCGCGCGCggcgucgcaGCAGGUGCcccCGGGa -3'
miRNA:   3'- -GCC---CGCGCGUGCG---------CGUCCACGu--GCUC- -5'
23740 3' -62.2 NC_005261.1 + 32912 0.73 0.243805
Target:  5'- gGGGCGCGCguggggggcgGCGgGCGGGggggGgGCGGGg -3'
miRNA:   3'- gCCCGCGCG----------UGCgCGUCCa---CgUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 74951 0.73 0.249532
Target:  5'- gCGGGCGCGCucgGCGCGCucgAGGccGCGCGc- -3'
miRNA:   3'- -GCCCGCGCG---UGCGCG---UCCa-CGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 133542 0.73 0.261318
Target:  5'- gGGGCGCGCA-GCGCAGcaugcUGCuCGGGg -3'
miRNA:   3'- gCCCGCGCGUgCGCGUCc----ACGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 77663 0.73 0.261318
Target:  5'- -cGGCGCcuGCAgGCGCAGG-GCGCGGa -3'
miRNA:   3'- gcCCGCG--CGUgCGCGUCCaCGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 29897 0.73 0.261318
Target:  5'- cCGGGCccgcggcaGCGCGCGaGCGGcUGCGCGAGc -3'
miRNA:   3'- -GCCCG--------CGCGUGCgCGUCcACGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 70581 0.73 0.261318
Target:  5'- uCGGGCGCGaGCGCaGCGGcGUGCGCc-- -3'
miRNA:   3'- -GCCCGCGCgUGCG-CGUC-CACGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 129350 0.73 0.26738
Target:  5'- gCGGuaGCGCccccuuccGCGCGCGGGUcGCGCGGc -3'
miRNA:   3'- -GCCcgCGCG--------UGCGCGUCCA-CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 67061 0.73 0.26738
Target:  5'- -aGGCGgGCGCGCGCGGGgGCucgcuCGGGc -3'
miRNA:   3'- gcCCGCgCGUGCGCGUCCaCGu----GCUC- -5'
23740 3' -62.2 NC_005261.1 + 46794 0.72 0.273554
Target:  5'- cCGGGCGCccgucgcgGCGCGCGCGGaugGCGCGc- -3'
miRNA:   3'- -GCCCGCG--------CGUGCGCGUCca-CGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 126949 0.72 0.273554
Target:  5'- gGGGCGC-CGgGCGCGGGggcggcaGCGCGAa -3'
miRNA:   3'- gCCCGCGcGUgCGCGUCCa------CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 12311 0.72 0.273554
Target:  5'- aCGGGCGCGUagccggcgggcGCGCGCuuGGccgGCGCGGc -3'
miRNA:   3'- -GCCCGCGCG-----------UGCGCGu-CCa--CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 123170 0.72 0.273554
Target:  5'- gCGGGCGCGCGgGCGU-GGUGgCugGuGu -3'
miRNA:   3'- -GCCCGCGCGUgCGCGuCCAC-GugCuC- -5'
23740 3' -62.2 NC_005261.1 + 105866 0.72 0.279843
Target:  5'- uCGGcGaUGCGguUGgGCAGGUGCACGAu -3'
miRNA:   3'- -GCC-C-GCGCguGCgCGUCCACGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 60001 0.72 0.279843
Target:  5'- uCGGGCaGCGCgACGgGCAGG-GaCACGAa -3'
miRNA:   3'- -GCCCG-CGCG-UGCgCGUCCaC-GUGCUc -5'
23740 3' -62.2 NC_005261.1 + 57786 0.72 0.279843
Target:  5'- cCGcGGCGuCGCGCG-GCGGGcGCGCGAa -3'
miRNA:   3'- -GC-CCGC-GCGUGCgCGUCCaCGUGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.