miRNA display CGI


Results 61 - 80 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 19253 0.72 0.286245
Target:  5'- gGGGCGCugaacaGCGCGCGCGGGUaCGCcAGc -3'
miRNA:   3'- gCCCGCG------CGUGCGCGUCCAcGUGcUC- -5'
23740 3' -62.2 NC_005261.1 + 132622 0.72 0.286245
Target:  5'- aGGGgGCGCugGCGCcgAGGacgcggGCGCGGc -3'
miRNA:   3'- gCCCgCGCGugCGCG--UCCa-----CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 72615 0.72 0.290796
Target:  5'- cCGGGCGgGCGgGCGCAGGgGCGgcuuuauaguccccUGGGg -3'
miRNA:   3'- -GCCCGCgCGUgCGCGUCCaCGU--------------GCUC- -5'
23740 3' -62.2 NC_005261.1 + 4504 0.72 0.292763
Target:  5'- gCGGGCcccagucgcGCGCcCGCGCGGGcGCcgcgGCGAGg -3'
miRNA:   3'- -GCCCG---------CGCGuGCGCGUCCaCG----UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 31577 0.72 0.292763
Target:  5'- aCGGGCGCGCcggacgugaGCGCGCucGGcGCGCaGGGc -3'
miRNA:   3'- -GCCCGCGCG---------UGCGCGu-CCaCGUG-CUC- -5'
23740 3' -62.2 NC_005261.1 + 128100 0.72 0.299396
Target:  5'- aCGGGCGagcgGCGCgGCGCGGGgucggGC-CGAGu -3'
miRNA:   3'- -GCCCGCg---CGUG-CGCGUCCa----CGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 28240 0.72 0.299396
Target:  5'- -cGGCGCGCGCGauaGCGGGggcUGCuCGGGg -3'
miRNA:   3'- gcCCGCGCGUGCg--CGUCC---ACGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 134911 0.72 0.299396
Target:  5'- gCGGGUGCGCAaGCGCAa--GCugGAGa -3'
miRNA:   3'- -GCCCGCGCGUgCGCGUccaCGugCUC- -5'
23740 3' -62.2 NC_005261.1 + 125922 0.72 0.299396
Target:  5'- gGGGCuCGcCACGCGCAcGGUagccgcugGCGCGGGg -3'
miRNA:   3'- gCCCGcGC-GUGCGCGU-CCA--------CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 86256 0.72 0.299396
Target:  5'- uCGuGuGCGCGCACGCGUgccGGUcgucGCGCGAGc -3'
miRNA:   3'- -GC-C-CGCGCGUGCGCGu--CCA----CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 32273 0.72 0.306145
Target:  5'- cCGaGGCGC-CGC-CGCuGGUGCugGAGg -3'
miRNA:   3'- -GC-CCGCGcGUGcGCGuCCACGugCUC- -5'
23740 3' -62.2 NC_005261.1 + 30378 0.72 0.313009
Target:  5'- cCGGGCGC-CGCgGCGCGGGUGgAgGuGg -3'
miRNA:   3'- -GCCCGCGcGUG-CGCGUCCACgUgCuC- -5'
23740 3' -62.2 NC_005261.1 + 70480 0.72 0.313009
Target:  5'- gCGGGUGCGCGCGCGUGa--GCACGuAGc -3'
miRNA:   3'- -GCCCGCGCGUGCGCGUccaCGUGC-UC- -5'
23740 3' -62.2 NC_005261.1 + 20564 0.72 0.313009
Target:  5'- gCGGGCuGCGCAgcgGCGCcGGcgGCGCGGGu -3'
miRNA:   3'- -GCCCG-CGCGUg--CGCGuCCa-CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 21036 0.72 0.315788
Target:  5'- gGGGCGCGCAcCGUGCGccauccuuuaaaggcGGcGCACGGu -3'
miRNA:   3'- gCCCGCGCGU-GCGCGU---------------CCaCGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 123915 0.71 0.327087
Target:  5'- gGGGUGCgGCcCGaGCAGGUGCGCGc- -3'
miRNA:   3'- gCCCGCG-CGuGCgCGUCCACGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 11471 0.71 0.327087
Target:  5'- gCGGGCGCGgAgGgGCGGG-GCGgGGGu -3'
miRNA:   3'- -GCCCGCGCgUgCgCGUCCaCGUgCUC- -5'
23740 3' -62.2 NC_005261.1 + 31825 0.71 0.327087
Target:  5'- gCGGcGCGCGCugGCGCGcgccGUGCugGc- -3'
miRNA:   3'- -GCC-CGCGCGugCGCGUc---CACGugCuc -5'
23740 3' -62.2 NC_005261.1 + 75488 0.71 0.327087
Target:  5'- gCGGGC-CGCuacgaGCGCGGGgcGCugGAGg -3'
miRNA:   3'- -GCCCGcGCGug---CGCGUCCa-CGugCUC- -5'
23740 3' -62.2 NC_005261.1 + 83679 0.71 0.327087
Target:  5'- uGGGCGCGCAgCGCGCcgccgAGGcgGCGCc-- -3'
miRNA:   3'- gCCCGCGCGU-GCGCG-----UCCa-CGUGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.