miRNA display CGI


Results 81 - 100 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 97418 0.71 0.334299
Target:  5'- gCGGGCGCGC-CGgGCcugcccuuGG-GCGCGGGu -3'
miRNA:   3'- -GCCCGCGCGuGCgCGu-------CCaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 84255 0.71 0.334299
Target:  5'- gGGGCGCuuggcccccgGCAUgGCGCAGGUGCcgccgGCGGc -3'
miRNA:   3'- gCCCGCG----------CGUG-CGCGUCCACG-----UGCUc -5'
23740 3' -62.2 NC_005261.1 + 69535 0.71 0.334299
Target:  5'- gCGGGCgcugGCGCGCGCGCuGG-GgACGGc -3'
miRNA:   3'- -GCCCG----CGCGUGCGCGuCCaCgUGCUc -5'
23740 3' -62.2 NC_005261.1 + 31389 0.71 0.334299
Target:  5'- cCGaGGaCGUGCGCGUGguGGUGCucuACGAc -3'
miRNA:   3'- -GC-CC-GCGCGUGCGCguCCACG---UGCUc -5'
23740 3' -62.2 NC_005261.1 + 127853 0.71 0.334299
Target:  5'- gGGGCGguCGCgGCGC-CAGG-GCACGAGc -3'
miRNA:   3'- gCCCGC--GCG-UGCGcGUCCaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 43779 0.71 0.334299
Target:  5'- gGGGCG-GCGCGCGgAGGgcgcCGCGGGu -3'
miRNA:   3'- gCCCGCgCGUGCGCgUCCac--GUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 32186 0.71 0.334299
Target:  5'- gCGGGCG-GCGCGCGCuGGaGCugGc- -3'
miRNA:   3'- -GCCCGCgCGUGCGCGuCCaCGugCuc -5'
23740 3' -62.2 NC_005261.1 + 58287 0.71 0.341628
Target:  5'- gGGGCcgGCGCGC-CGgGGG-GCGCGGGg -3'
miRNA:   3'- gCCCG--CGCGUGcGCgUCCaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 112065 0.71 0.349071
Target:  5'- uCGGGCGUGCccucgucggcgaGgGCGCcacguGGUGCGCGGu -3'
miRNA:   3'- -GCCCGCGCG------------UgCGCGu----CCACGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 71199 0.71 0.349071
Target:  5'- gGGGCGCGgccaGCuGCGCGauGGUGCGCGc- -3'
miRNA:   3'- gCCCGCGCg---UG-CGCGU--CCACGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 121164 0.71 0.349071
Target:  5'- aGGGuUGCcCGgGCGCucGGUGCACGGGg -3'
miRNA:   3'- gCCC-GCGcGUgCGCGu-CCACGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 133631 0.71 0.35663
Target:  5'- uGGGcCGCGCucgcCGCGCcGcUGCGCGAGc -3'
miRNA:   3'- gCCC-GCGCGu---GCGCGuCcACGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 31322 0.71 0.35663
Target:  5'- gCGGGCGCGCucgccgccaGCGCGCcgcugcGGcgGCGCGuGg -3'
miRNA:   3'- -GCCCGCGCG---------UGCGCGu-----CCa-CGUGCuC- -5'
23740 3' -62.2 NC_005261.1 + 93912 0.71 0.35663
Target:  5'- gCGGGCGCgGCGCcCGCGGGcuUGCGCc-- -3'
miRNA:   3'- -GCCCGCG-CGUGcGCGUCC--ACGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 100662 0.71 0.35663
Target:  5'- -cGGCGCGCGuCGCG-GGGUucgcGCGCGAGu -3'
miRNA:   3'- gcCCGCGCGU-GCGCgUCCA----CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 73211 0.7 0.364303
Target:  5'- cCGGGCGCcucgagGgGCGCGguGGccgcgaGCGCGAGc -3'
miRNA:   3'- -GCCCGCG------CgUGCGCguCCa-----CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 133030 0.7 0.367404
Target:  5'- gCGGGCGCGCcacCGCGCAcgcacGUGCugcgcggcguuggcgGCGAGu -3'
miRNA:   3'- -GCCCGCGCGu--GCGCGUc----CACG---------------UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 44985 0.7 0.372089
Target:  5'- cCGGGCGgGC-CGCcaCAGGUGCuCGAu -3'
miRNA:   3'- -GCCCGCgCGuGCGc-GUCCACGuGCUc -5'
23740 3' -62.2 NC_005261.1 + 14777 0.7 0.372089
Target:  5'- gGGGC-CGCccCGCGCAGGUGC-CGc- -3'
miRNA:   3'- gCCCGcGCGu-GCGCGUCCACGuGCuc -5'
23740 3' -62.2 NC_005261.1 + 58703 0.7 0.379988
Target:  5'- aGGGCGCGC-CGCuGagAGGUGCGCc-- -3'
miRNA:   3'- gCCCGCGCGuGCG-Cg-UCCACGUGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.